Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20930
         (798 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h...   108   5e-24
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad...   108   5e-24
At5g38710.1 68418.m04682 proline oxidase, putative / osmotic str...    29   3.6  
At2g34360.1 68415.m04207 MATE efflux family protein similar to r...    29   4.7  
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    29   4.7  
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ...    28   8.3  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    28   8.3  

>At4g13940.1 68417.m02157 adenosylhomocysteinase /
           S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
           identical to SP|O23255 Adenosylhomocysteinase (EC
           3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
           (AdoHcyase) {Arabidopsis thaliana}; strong similarity to
           SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
           sylvestris}
          Length = 485

 Score =  108 bits (259), Expect = 5e-24
 Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
 Frame = +3

Query: 255 KGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGE 434
           KGARI GSLHMT+QTAVLIETL  LGAEV+W S NI+STQD AAAA+      ++AWKGE
Sbjct: 53  KGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGE 112

Query: 435 TDDEYIWCIEQTLIF-PDGKP 494
           T  EY WC E+ L + P G P
Sbjct: 113 TLQEYWWCTERALDWGPGGGP 133



 Score =  104 bits (249), Expect = 8e-23
 Identities = 49/73 (67%), Positives = 58/73 (79%)
 Frame = +2

Query: 545 KYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSKFDNLYGCRESLLD 724
           KY  + + + G++EETTTGV  LY+M + G L  PAINVNDSVTKSKFDNLYGCR SL D
Sbjct: 191 KYHKMKERLVGVSEETTTGVKRLYQMQQNGTLLFPAINVNDSVTKSKFDNLYGCRHSLPD 250

Query: 725 GIKRATDIMIAGK 763
           G+ RATD+MIAGK
Sbjct: 251 GLMRATDVMIAGK 263



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +1

Query: 139 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
           YK+ D   A++GR E+ LAE EMPGLMACR ++ P++  K
Sbjct: 14  YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFK 53


>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
           S-adenosyl-L-homocysteine hydrolase, putative /
           AdoHcyase, putative strong similarity to
           SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
           {Nicotiana sylvestris}; contains Pfam profile PF00670:
           S-adenosyl-L-homocysteine hydrolase, NAD binding domain
          Length = 485

 Score =  108 bits (259), Expect = 5e-24
 Identities = 52/81 (64%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
 Frame = +3

Query: 255 KGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGE 434
           KGARI GSLHMT+QTAVLIETL  LGAEV+W S NI+STQD AAAA+      ++AWKGE
Sbjct: 53  KGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGE 112

Query: 435 TDDEYIWCIEQTLIF-PDGKP 494
           T  EY WC E+ L + P G P
Sbjct: 113 TLQEYWWCTERALDWGPGGGP 133



 Score =  103 bits (247), Expect = 1e-22
 Identities = 49/73 (67%), Positives = 57/73 (78%)
 Frame = +2

Query: 545 KYPDLLKDVKGITEETTTGVHNLYKMFREGLLKAPAINVNDSVTKSKFDNLYGCRESLLD 724
           KY  + + + G++EETTTGV  LY+M   G L  PAINVNDSVTKSKFDNLYGCR SL D
Sbjct: 191 KYHKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLPD 250

Query: 725 GIKRATDIMIAGK 763
           G+ RATD+MIAGK
Sbjct: 251 GLMRATDVMIAGK 263



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +1

Query: 139 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILK 258
           YK+ D   A++GR EI LAE EMPGL++C  ++ P++ LK
Sbjct: 14  YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLK 53


>At5g38710.1 68418.m04682 proline oxidase, putative / osmotic
           stress-responsive proline dehydrogenase, putative
           similar to proline oxidase, mitochondrial precursor
           (Osmotic stress- induced proline dehydrogenase)
           [Arabidopsis thaliana] SWISS-PROT:P92983
          Length = 476

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 632 GLLKAPAINVNDSVTKSKFDNLYGCRESLLDGIKRA 739
           G  KA  + +N    K +F  LYG  ++L  G+KRA
Sbjct: 389 GARKASELGINKENGKIEFAQLYGMSDALSFGLKRA 424


>At2g34360.1 68415.m04207 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 466

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +3

Query: 258 GARIAGSLHMTVQTAVLIETLIELGAEVQWSSSN---IYSTQDEAAAAL 395
           GA++ G L + +Q A+L+ TL+ +   + W+++    ++  QD++ A L
Sbjct: 98  GAKMYGMLGIQMQRAMLVLTLLSVPLSIVWANTEHFLVFFGQDKSIAHL 146


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 351 SSNIYSTQDEAAAALVAVGIPIYAWKGETDDE 446
           SS++YS  D     +   GI  Y W+G  D++
Sbjct: 25  SSDLYSRSDFPEGFVFGAGISAYQWEGAVDED 56


>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
           weak similarity to S-locus protein 4 (GI:6069478)
           [Brassica rapa]; weak similarity to Pre-mRNA cleavage
           complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
           [Homo sapiens]; contains Prosite PS00028: Zinc finger,
           C2H2 type, domain
          Length = 828

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 402 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLN 500
           +G+P  +WK   ++E++W +   L   D   +N
Sbjct: 261 IGVPYDSWKNSEEEEFMWDMHSRLSETDVATIN 293


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 540 WTKFVKSPPSSRSY*EAFHQGRSMFVQYTKYTRH 439
           W K ++ P SSR   +   Q   +F Q   YTRH
Sbjct: 39  WNKLLELPLSSRWPSDRVQQACELFAQSNGYTRH 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,273
Number of Sequences: 28952
Number of extensions: 366317
Number of successful extensions: 984
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)