Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20929
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    32   0.083
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    31   0.19 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   0.44 
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   9.5  
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.5  

>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 25/92 (27%), Positives = 45/92 (48%)
 Frame = +2

Query: 365 VWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLS 544
           +W+ + E V+  L++ K+++     E+++K    + S   GG  A VSA   R A     
Sbjct: 289 LWQPVLETVS--LEDAKKNE--NNRENLVKQWRREASKF-GGFAADVSAERWRAAALGNL 343

Query: 545 APSKNASVRLMKTSRVK*LLDRTRLRASTRRC 640
           + S+ A++     S  + LL++ R R   R C
Sbjct: 344 SQSETANLPSASVSDAQTLLEQERPRWRCRWC 375


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +1

Query: 256 MESRASPCRR*NRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSI 429
           + S +S   + +RD+ +   +++     +G +    H+G ER  R R+   + R+ + S 
Sbjct: 7   LSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66

Query: 430 PKN*ICDKNDRREDVFDHRRHHGRRVRKLGQMRN-----SESFRSIEERV 564
            ++   D+  RRE  +D       R   +G+ R+       S RSIE+ +
Sbjct: 67  ERSYREDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSVRSIEQEL 116


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +2

Query: 290 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 460
           + +L T+L   +R +SDL  + G+    +I + +N  ++N     ES  +  + SVIK  
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235

Query: 461 AEKTSSII 484
            ++  S++
Sbjct: 236 FKEHESVL 243


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/85 (29%), Positives = 39/85 (45%)
 Frame = +2

Query: 311 LQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG 490
           L + I  SSDL    G  ++       NQG     E   ++ ++S +       S+I GG
Sbjct: 79  LDTDISISSDLPTD-GWQIYFNGATSQNQGSLAQSEQFDFEGSDSTLAA-----STISGG 132

Query: 491 ITAGVSASSVRCATRSLSAPSKNAS 565
           I +  SASS   +T + S+ S  +S
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSS 157


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 204 PDELAGLTPEQADQLRAN 257
           P+EL  L+P + D+LRA+
Sbjct: 385 PEELKNLSPAEVDELRAS 402


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 469 DVFDHRRHHGRRVRKLGQMRNSESFR 546
           D   HRRHH  +V    Q ++S + R
Sbjct: 75  DEMKHRRHHVHKVHHYSQKQSSSTTR 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,498
Number of Sequences: 5004
Number of extensions: 47389
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)