BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20929 (651 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 31 0.80 09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 4.2 08_02_0894 + 22346027-22347925 29 4.2 01_06_1155 - 34957402-34957824 29 4.2 06_01_0917 - 7077934-7080339 28 5.6 01_01_1127 + 8930593-8932681,8932812-8933401 28 5.6 10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 28 7.4 06_03_1248 + 28685911-28687719 28 7.4 10_08_0520 - 18495118-18498237 27 9.8 05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 27 9.8 03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 27 9.8 03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 27 9.8 >02_05_0437 - 28986459-28986524,28986606-28986731,28986842-28986941, 28987583-28987660,28987857-28987937,28989488-28989624, 28989693-28989743,28989785-28989878,28990091-28990260 Length = 300 Score = 31.1 bits (67), Expect = 0.80 Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +2 Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKESQVYQKT 439 +E+ ++++EI +++ + + D+++++G +T ITE+++ ++N + KT Sbjct: 205 QEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAAATKEAKT 264 Query: 440 ESVIKTTAEKTSS 478 E + +K++S Sbjct: 265 ELAKASKTQKSNS 277 >09_05_0015 - 20083143-20083308,20083645-20084017,20084362-20084675, 20085164-20085512,20085678-20085837,20086307-20086618, 20086700-20086820,20087225-20087277 Length = 615 Score = 28.7 bits (61), Expect = 4.2 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -1 Query: 462 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 301 AV + SV++ W + ++F+P L SSV+ VM ++ F ILL VL Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330 >08_02_0894 + 22346027-22347925 Length = 632 Score = 28.7 bits (61), Expect = 4.2 Identities = 19/81 (23%), Positives = 37/81 (45%) Frame = +2 Query: 320 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA 499 K++ S DL +G K +T N + S + ++ ++ + GG ++ Sbjct: 475 KVKDSPDLWNLIGDDYLKRLTGKFTMAATNYQRSAWLK----ILNCLRDEGLHVSGGFSS 530 Query: 500 GVSASSVRCATRSLSAPSKNA 562 G+S S++R RS +A + A Sbjct: 531 GISKSALRERFRSFNAAFEEA 551 >01_06_1155 - 34957402-34957824 Length = 140 Score = 28.7 bits (61), Expect = 4.2 Identities = 22/78 (28%), Positives = 29/78 (37%) Frame = +1 Query: 415 RKPSIPKN*ICDKNDRREDVFDHRRHHGRRVRKLGQMRNSESFRSIEERVGSAYENVKGK 594 R P P N + K R R G K+GQ R + + EER + G Sbjct: 25 RPPPRPLNHVAGKPPNRCRFLRQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPGA 84 Query: 595 VASRSNSTQSFDEALRDA 648 RS S + D A R + Sbjct: 85 PPLRSVSVKLADHATRSS 102 >06_01_0917 - 7077934-7080339 Length = 801 Score = 28.3 bits (60), Expect = 5.6 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -1 Query: 621 LSRVRSRSYFTLDVFISRTDAFFDGAERLRVAHLTELADTPAVMP 487 LS +RS V R G+ +L A+LTELAD MP Sbjct: 32 LSAIRSAPLAKRSVIYERALRALPGSYKLWHAYLTELADAARAMP 76 >01_01_1127 + 8930593-8932681,8932812-8933401 Length = 892 Score = 28.3 bits (60), Expect = 5.6 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Frame = +2 Query: 272 ARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKESQVYQKTE 442 AR++ EI R Q +DLKRK L W+ I E + L+ K+ + ++ Sbjct: 135 ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRR-FESFV 193 Query: 443 SVIKTTAEKTSSIIGGITA 499 V T EK G +TA Sbjct: 194 PVPDTLLEKARQEQGHVTA 212 >10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546, 18156654-18156808,18157611-18157824,18158977-18159077, 18159162-18159285,18159584-18159655,18159897-18159961, 18160167-18160233,18160917-18161015,18161099-18161167, 18161286-18161409,18162507-18162566,18163111-18163634 Length = 1011 Score = 27.9 bits (59), Expect = 7.4 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2 Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 445 ++R + I +R + ++ + S + L ++K+ E++ + G E +VY K + Sbjct: 829 ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888 Query: 446 VIKTTAEKTSSIIGGI 493 + AEK SI+ I Sbjct: 889 DLIINAEKAKSIVQDI 904 >06_03_1248 + 28685911-28687719 Length = 602 Score = 27.9 bits (59), Expect = 7.4 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 265 ATPLARNWSACSGVRPANSSGVCMSPATPVPDIASSAV 152 ATP A + +A PA++S V ATP A AV Sbjct: 169 ATPAATSAAAKDAATPASTSAVRKKAATPATSAAGKAV 206 >10_08_0520 - 18495118-18498237 Length = 1039 Score = 27.5 bits (58), Expect = 9.8 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%) Frame = +2 Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKE 418 R AR++ EI R Q +DLKRK L W+ I E + L+N K+ Sbjct: 229 RREARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKK 283 >05_07_0079 - 27539389-27539892,27540059-27540343,27540453-27540550, 27540951-27541042,27541155-27541259,27541360-27541567, 27542469-27542472,27542742-27542765,27545025-27546266 Length = 853 Score = 27.5 bits (58), Expect = 9.8 Identities = 27/111 (24%), Positives = 47/111 (42%) Frame = +2 Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTE 442 + L VE+E A +S R+ K++L + ++ +DV++ K VKE +T Sbjct: 294 KALKHVEEENAGEEAAQESGKRKRG--KKQLAEDLMEQDIQDVSEKRKKVKEGTPAAETP 351 Query: 443 SVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKNASVRLMKTSRVK 595 + K EK+ + G AS + + + S K S+VK Sbjct: 352 KISKKGKEKSKRALD--KEGEDASVEEASNKKKKGKKEVVSDVGEKNSKVK 400 >03_05_0415 - 24019330-24019539,24020948-24021099,24021765-24021846, 24021930-24022068,24022775-24023127 Length = 311 Score = 27.5 bits (58), Expect = 9.8 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = +2 Query: 227 TRAGRPVTR*WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITE 385 T RP WSREL I T+ T ++ + S + + +WK TE Sbjct: 63 TTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATE 115 >03_05_0229 - 22142255-22142344,22142471-22142527,22142621-22142705, 22143552-22143677,22143750-22143793,22143877-22143999, 22144078-22144216,22148795-22151292 Length = 1053 Score = 27.5 bits (58), Expect = 9.8 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +2 Query: 338 DLKRKLGITVWKEITEDVNQGLKNVKE 418 D RK+GI +E+ +D N+G+ VKE Sbjct: 982 DAARKVGIEGAEELLQDSNKGVDEVKE 1008 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,211,141 Number of Sequences: 37544 Number of extensions: 292728 Number of successful extensions: 857 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 842 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 857 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1620349964 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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