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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20929
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869...    31   0.80 
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846...    29   4.2  
08_02_0894 + 22346027-22347925                                         29   4.2  
01_06_1155 - 34957402-34957824                                         29   4.2  
06_01_0917 - 7077934-7080339                                           28   5.6  
01_01_1127 + 8930593-8932681,8932812-8933401                           28   5.6  
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565...    28   7.4  
06_03_1248 + 28685911-28687719                                         28   7.4  
10_08_0520 - 18495118-18498237                                         27   9.8  
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    27   9.8  
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218...    27   9.8  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    27   9.8  

>02_05_0437 -
           28986459-28986524,28986606-28986731,28986842-28986941,
           28987583-28987660,28987857-28987937,28989488-28989624,
           28989693-28989743,28989785-28989878,28990091-28990260
          Length = 300

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +2

Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKESQVYQKT 439
           +E+ ++++EI     +++ + +   D+++++G +T    ITE+++  ++N   +    KT
Sbjct: 205 QEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAAATKEAKT 264

Query: 440 ESVIKTTAEKTSS 478
           E    +  +K++S
Sbjct: 265 ELAKASKTQKSNS 277


>09_05_0015 -
           20083143-20083308,20083645-20084017,20084362-20084675,
           20085164-20085512,20085678-20085837,20086307-20086618,
           20086700-20086820,20087225-20087277
          Length = 615

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 462 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 301
           AV  +  SV++  W + ++F+P L SSV+     VM ++ F      ILL   VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +2

Query: 320 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA 499
           K++ S DL   +G    K +T        N + S   +    ++    ++   + GG ++
Sbjct: 475 KVKDSPDLWNLIGDDYLKRLTGKFTMAATNYQRSAWLK----ILNCLRDEGLHVSGGFSS 530

Query: 500 GVSASSVRCATRSLSAPSKNA 562
           G+S S++R   RS +A  + A
Sbjct: 531 GISKSALRERFRSFNAAFEEA 551


>01_06_1155 - 34957402-34957824
          Length = 140

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/78 (28%), Positives = 29/78 (37%)
 Frame = +1

Query: 415 RKPSIPKN*ICDKNDRREDVFDHRRHHGRRVRKLGQMRNSESFRSIEERVGSAYENVKGK 594
           R P  P N +  K   R       R  G    K+GQ R +  +   EER       + G 
Sbjct: 25  RPPPRPLNHVAGKPPNRCRFLRQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPGA 84

Query: 595 VASRSNSTQSFDEALRDA 648
              RS S +  D A R +
Sbjct: 85  PPLRSVSVKLADHATRSS 102


>06_01_0917 - 7077934-7080339
          Length = 801

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 621 LSRVRSRSYFTLDVFISRTDAFFDGAERLRVAHLTELADTPAVMP 487
           LS +RS       V   R      G+ +L  A+LTELAD    MP
Sbjct: 32  LSAIRSAPLAKRSVIYERALRALPGSYKLWHAYLTELADAARAMP 76


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +2

Query: 272 ARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKESQVYQKTE 442
           AR++ EI   R        Q +DLKRK   L    W+ I E  +  L+  K+ + ++   
Sbjct: 135 ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRR-FESFV 193

Query: 443 SVIKTTAEKTSSIIGGITA 499
            V  T  EK     G +TA
Sbjct: 194 PVPDTLLEKARQEQGHVTA 212


>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
            18156654-18156808,18157611-18157824,18158977-18159077,
            18159162-18159285,18159584-18159655,18159897-18159961,
            18160167-18160233,18160917-18161015,18161099-18161167,
            18161286-18161409,18162507-18162566,18163111-18163634
          Length = 1011

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +2

Query: 269  LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 445
            ++R +  I  +R + ++  +  S +   L   ++K+  E++ + G     E +VY K  +
Sbjct: 829  ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888

Query: 446  VIKTTAEKTSSIIGGI 493
             +   AEK  SI+  I
Sbjct: 889  DLIINAEKAKSIVQDI 904


>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 265 ATPLARNWSACSGVRPANSSGVCMSPATPVPDIASSAV 152
           ATP A + +A     PA++S V    ATP    A  AV
Sbjct: 169 ATPAATSAAAKDAATPASTSAVRKKAATPATSAAGKAV 206


>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKE 418
           R  AR++ EI   R        Q +DLKRK   L    W+ I E  +  L+N K+
Sbjct: 229 RREARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKK 283


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 27/111 (24%), Positives = 47/111 (42%)
 Frame = +2

Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTE 442
           + L  VE+E A      +S  R+    K++L   + ++  +DV++  K VKE     +T 
Sbjct: 294 KALKHVEEENAGEEAAQESGKRKRG--KKQLAEDLMEQDIQDVSEKRKKVKEGTPAAETP 351

Query: 443 SVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKNASVRLMKTSRVK 595
            + K   EK+   +     G  AS    + +      +  S    K S+VK
Sbjct: 352 KISKKGKEKSKRALD--KEGEDASVEEASNKKKKGKKEVVSDVGEKNSKVK 400


>03_05_0415 -
           24019330-24019539,24020948-24021099,24021765-24021846,
           24021930-24022068,24022775-24023127
          Length = 311

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 227 TRAGRPVTR*WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITE 385
           T   RP    WSREL      I T+ T ++ +   S     +  + +WK  TE
Sbjct: 63  TTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATE 115


>03_05_0229 - 22142255-22142344,22142471-22142527,22142621-22142705,
            22143552-22143677,22143750-22143793,22143877-22143999,
            22144078-22144216,22148795-22151292
          Length = 1053

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 338  DLKRKLGITVWKEITEDVNQGLKNVKE 418
            D  RK+GI   +E+ +D N+G+  VKE
Sbjct: 982  DAARKVGIEGAEELLQDSNKGVDEVKE 1008


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,141
Number of Sequences: 37544
Number of extensions: 292728
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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