Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20929
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 31 0.80
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 4.2
08_02_0894 + 22346027-22347925 29 4.2
01_06_1155 - 34957402-34957824 29 4.2
06_01_0917 - 7077934-7080339 28 5.6
01_01_1127 + 8930593-8932681,8932812-8933401 28 5.6
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 28 7.4
06_03_1248 + 28685911-28687719 28 7.4
10_08_0520 - 18495118-18498237 27 9.8
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 27 9.8
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218... 27 9.8
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 27 9.8
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKESQVYQKT 439
+E+ ++++EI +++ + + D+++++G +T ITE+++ ++N + KT
Sbjct: 205 QEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAAATKEAKT 264
Query: 440 ESVIKTTAEKTSS 478
E + +K++S
Sbjct: 265 ELAKASKTQKSNS 277
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 462 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 301
AV + SV++ W + ++F+P L SSV+ VM ++ F ILL VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330
>08_02_0894 + 22346027-22347925
Length = 632
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +2
Query: 320 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA 499
K++ S DL +G K +T N + S + ++ ++ + GG ++
Sbjct: 475 KVKDSPDLWNLIGDDYLKRLTGKFTMAATNYQRSAWLK----ILNCLRDEGLHVSGGFSS 530
Query: 500 GVSASSVRCATRSLSAPSKNA 562
G+S S++R RS +A + A
Sbjct: 531 GISKSALRERFRSFNAAFEEA 551
>01_06_1155 - 34957402-34957824
Length = 140
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/78 (28%), Positives = 29/78 (37%)
Frame = +1
Query: 415 RKPSIPKN*ICDKNDRREDVFDHRRHHGRRVRKLGQMRNSESFRSIEERVGSAYENVKGK 594
R P P N + K R R G K+GQ R + + EER + G
Sbjct: 25 RPPPRPLNHVAGKPPNRCRFLRQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPGA 84
Query: 595 VASRSNSTQSFDEALRDA 648
RS S + D A R +
Sbjct: 85 PPLRSVSVKLADHATRSS 102
>06_01_0917 - 7077934-7080339
Length = 801
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -1
Query: 621 LSRVRSRSYFTLDVFISRTDAFFDGAERLRVAHLTELADTPAVMP 487
LS +RS V R G+ +L A+LTELAD MP
Sbjct: 32 LSAIRSAPLAKRSVIYERALRALPGSYKLWHAYLTELADAARAMP 76
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 28.3 bits (60), Expect = 5.6
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 272 ARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKESQVYQKTE 442
AR++ EI R Q +DLKRK L W+ I E + L+ K+ + ++
Sbjct: 135 ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRR-FESFV 193
Query: 443 SVIKTTAEKTSSIIGGITA 499
V T EK G +TA
Sbjct: 194 PVPDTLLEKARQEQGHVTA 212
>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +2
Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 445
++R + I +R + ++ + S + L ++K+ E++ + G E +VY K +
Sbjct: 829 ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888
Query: 446 VIKTTAEKTSSIIGGI 493
+ AEK SI+ I
Sbjct: 889 DLIINAEKAKSIVQDI 904
>06_03_1248 + 28685911-28687719
Length = 602
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 265 ATPLARNWSACSGVRPANSSGVCMSPATPVPDIASSAV 152
ATP A + +A PA++S V ATP A AV
Sbjct: 169 ATPAATSAAAKDAATPASTSAVRKKAATPATSAAGKAV 206
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKE 418
R AR++ EI R Q +DLKRK L W+ I E + L+N K+
Sbjct: 229 RREARLKQEIEKYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRNKKK 283
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 27.5 bits (58), Expect = 9.8
Identities = 27/111 (24%), Positives = 47/111 (42%)
Frame = +2
Query: 263 RELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTE 442
+ L VE+E A +S R+ K++L + ++ +DV++ K VKE +T
Sbjct: 294 KALKHVEEENAGEEAAQESGKRKRG--KKQLAEDLMEQDIQDVSEKRKKVKEGTPAAETP 351
Query: 443 SVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKNASVRLMKTSRVK 595
+ K EK+ + G AS + + + S K S+VK
Sbjct: 352 KISKKGKEKSKRALD--KEGEDASVEEASNKKKKGKKEVVSDVGEKNSKVK 400
>03_05_0415 -
24019330-24019539,24020948-24021099,24021765-24021846,
24021930-24022068,24022775-24023127
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 227 TRAGRPVTR*WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITE 385
T RP WSREL I T+ T ++ + S + + +WK TE
Sbjct: 63 TTTPRPTEIPWSRELCNSVRLIGTVGTEVELRQLPSGGSVARGRLAIWKSATE 115
>03_05_0229 - 22142255-22142344,22142471-22142527,22142621-22142705,
22143552-22143677,22143750-22143793,22143877-22143999,
22144078-22144216,22148795-22151292
Length = 1053
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 338 DLKRKLGITVWKEITEDVNQGLKNVKE 418
D RK+GI +E+ +D N+G+ VKE
Sbjct: 982 DAARKVGIEGAEELLQDSNKGVDEVKE 1008
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,141
Number of Sequences: 37544
Number of extensions: 292728
Number of successful extensions: 857
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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