Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20929
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   54   8e-08
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)                 30   1.4  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     29   2.5  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                29   3.3  
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        29   4.3  
SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)                  28   5.7  
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)           28   5.7  
SB_3699| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  
SB_9260| Best HMM Match : EPSP_synthase (HMM E-Value=0)                28   7.6  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
 Frame = +2

Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK---- 436
           L  +E+EI TL+  L  K  Q +DLKR+LGIT W +I E +      V++S+ Y K    
Sbjct: 73  LRHIEEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQG 132

Query: 437 ---TESVIKTTAEKTSSII 484
              T+ V+   +EKT S +
Sbjct: 133 ASATKVVLVDASEKTVSAV 151


>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
          Length = 423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 367 VERDHRGRQSGFEKRQRKPS-IPKN*ICDKNDRRE-DVFDHRRHHGRRVRKLGQMRNSES 540
           V++ +   +   EK Q +P  IP     ++ D++E +   HR HH   V K  +    E 
Sbjct: 283 VQKTNEEDKEEIEKNQHRPHHIPIVEKTNEEDKKEIEKNQHRPHHIPIVEKTNEEDKEEF 342

Query: 541 FRSIEERVGSAYENVKGKV 597
           F+ +E+R+ +   ++  K+
Sbjct: 343 FQKLEQRLETEITSMDQKL 361


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = +2

Query: 266  ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 445
            E+ ++++ +  L+   Q+K R+     + L  T   E +ED+   L++  +S+V QKT+ 
Sbjct: 2831 EIQQMKEHVIALQE--QAKRREKELHAQLLAKTRQLEQSEDITDSLRDAIDSEVAQKTDL 2888

Query: 446  VIKTTAEKT 472
                 +E+T
Sbjct: 2889 TNTLNSERT 2897


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 29/42 (69%)
 Frame = +2

Query: 215 GRPHTRAGRPVTR*WSRELARVEDEIATLRTVLQSKIRQSSD 340
           GRP+TR  + VT   + ++ R+ED+  ++ T+L+ +++ +S+
Sbjct: 149 GRPYTRKSQHVTFSENEQIIRIEDDQVSM-TLLRKRLKFASE 189


>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
 Frame = +2

Query: 287  EIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAE 466
            +   L+T L+  +    DL+   G++ W      + Q ++ +   + + KT+       E
Sbjct: 995  DAVALQTCLEGLVPSVQDLQDHDGVSRWCARVTCLRQTVETMTSKENFDKTDEKSGGYGE 1054

Query: 467  KTSSIIGGI-TAGVSASSVRCATRSLSAPSKNA--SVRLMKTSRVK*LLDRTRLRAS 628
            +T +II    +    AS VR     +++P  +A  S  L K  ++  L D T + A+
Sbjct: 1055 RTQNIIKHCWSLWQRASIVRLFVEHVTSPDDHAVNSANLQKLWKI--LGDETDMMAN 1109


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 218  RPHTRAGRPVTR*WSRELARVED 286
            +P TR G PVTR W R   RV D
Sbjct: 3900 KPLTRRGNPVTRAWRRLRERVRD 3922


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +2

Query: 278 VEDEIATLRTVLQSKIRQSSDLKRKL--------GITVWKEITEDVNQGLKNVKESQ 424
           +E+EI   +  L+   R+++DLK KL        G  V K++T  V +  +N+K  Q
Sbjct: 138 LEEEITAKKAALKQISRENTDLKSKLELLMKDQSGAAVIKDLTRQVEELRENLKAKQ 194


>SB_30489| Best HMM Match : HEAT (HMM E-Value=9.2e-17)
          Length = 722

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +2

Query: 404 KNVKESQVYQKT--ESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKNASVRLM 577
           K VK+  +  KT  E V +TT+    S+ GG ++   +      ++S S+P  + S  L 
Sbjct: 458 KLVKKGSLKSKTGKEQVKRTTSGSHPSLAGGASSSKQSQKSSVTSKSSSSPKSSPSSSLQ 517

Query: 578 KTSRV 592
           +   +
Sbjct: 518 RLPNI 522


>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
          Length = 431

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 361 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 459
           HG     RG Q+  +KR   P +PK+ +  K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401


>SB_3699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 463 REDVFDHRRHHGRRVRKLG 519
           +E +FDHR  H + +RKLG
Sbjct: 330 KETIFDHRFQHVKELRKLG 348


>SB_9260| Best HMM Match : EPSP_synthase (HMM E-Value=0)
          Length = 465

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 463 REDVFDHRRHHGRRVRKLG 519
           +E +FDHR  H + +RKLG
Sbjct: 319 KETIFDHRFQHVKELRKLG 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,770,185
Number of Sequences: 59808
Number of extensions: 343834
Number of successful extensions: 1148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)