Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20929
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    67   9e-12
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    32   0.31 
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    29   2.2  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 67.3 bits (157), Expect = 9e-12
 Identities = 28/67 (41%), Positives = 49/67 (73%)
 Frame = +2

Query: 266 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 445
           EL + E+EI+TL+ VL ++ + +++LKRKLG+T + E+++D+N+ LK V ++  YQKT  
Sbjct: 67  ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAE 126

Query: 446 VIKTTAE 466
           V   T++
Sbjct: 127 VAAATSD 133



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 511 KLGQMRNSESFRSIEERVGSAYENVK 588
           K   MRNS  F+S E ++GSA  N K
Sbjct: 138 KWNDMRNSSLFKSFESKLGSALNNAK 163


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = +2

Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNV------KES 421
           L++V D +      L+ + ++ ++ K+K     I  WKE+++ V + +++V      KE 
Sbjct: 69  LSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWKEVSQQVGEFVESVKEKKQAKEQ 128

Query: 422 QVYQKTESVIKTTAEK 469
           +  QK +  +KT  +K
Sbjct: 129 EKQQKIDDFVKTFTDK 144


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 326 RQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGV 505
           ++ S LK KLGIT W ++ + + +  K +K S    ++ S +        S     + G+
Sbjct: 204 KEYSRLKMKLGITSWMKLKDPIEELKKIIKTSLQAVESSSGVDEIVHTDHSAQQLASRGM 263

Query: 506 SASSVR 523
             SS++
Sbjct: 264 QRSSIK 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,311,298
Number of Sequences: 27780
Number of extensions: 261867
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)