Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20929
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g37020.1 68414.m04616 Ulp1 protease family protein                  35   0.041
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m...    32   0.38 
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    30   1.5  
At1g05900.2 68414.m00619 endonuclease-related similar to endonuc...    29   2.0  
At1g05900.1 68414.m00618 endonuclease-related similar to endonuc...    29   2.0  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    29   2.7  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.7  
At4g10270.1 68417.m01688 wound-responsive family protein similar...    29   3.5  
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai...    28   4.7  
At4g26050.1 68417.m03750 leucine-rich repeat family protein cont...    28   4.7  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    28   4.7  
At1g02330.1 68414.m00178 expressed protein contains similarity t...    28   4.7  
At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont...    28   6.2  
At3g55160.1 68416.m06126 expressed protein                             27   8.2  

>At1g37020.1 68414.m04616 Ulp1 protease family protein
          Length = 611

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 23/83 (27%), Positives = 41/83 (49%)
 Frame = +2

Query: 281 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTT 460
           EDE       LQ KI+ ++  K+K    + K+ ++   + +  VKE +V   T  V+K T
Sbjct: 253 EDETPNKELELQLKIKDATKGKKKKVAIMPKKASKIPKKKMAKVKEMKV--STPKVLKKT 310

Query: 461 AEKTSSIIGGITAGVSASSVRCA 529
             +    +G +T  V A +++ A
Sbjct: 311 MRRDDDYVGDVTEKVVADTLKMA 333


>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
           myosin heavy chain (GI:1408194) {Placopecten
           magellanicus}; similar to Myosin heavy chain, clone 203
           (Fragment) (SP:P39922){Hydra attenuata}; contains one
           transmembrane domain
          Length = 323

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESV 448
           +  +E E+A LRTV +   ++  +L+ KLG    KE+ E   +     +  +     E  
Sbjct: 146 IEELEKEVAGLRTVKEENEKRMKELESKLGALEVKELDEKNKKFRAEEEMREKIDNKEKE 205

Query: 449 IKTTAEKTSSIIGGITAG 502
           +    EK  S+   +  G
Sbjct: 206 VHDLKEKIKSLESDVAKG 223


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 278 VEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV 412
           V D +A LRT L+S+ +   +LK+K   ++W  I E+V + L +V
Sbjct: 308 VGDTLAILRTELKSQKKHVRNLKKK---SLWSRILEEVMEKLVDV 349


>At1g05900.2 68414.m00619 endonuclease-related similar to
           endonuclease III [Homo sapiens] GI:1753174; contains
           Pfam profile PF00633: Helix-hairpin-helix motif
          Length = 386

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 398 GLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKN 559
           GL ++++S  Y+KT     +   K +S I    A  SASS++  T  L  P +N
Sbjct: 93  GLPDIEDSP-YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143


>At1g05900.1 68414.m00618 endonuclease-related similar to
           endonuclease III [Homo sapiens] GI:1753174; contains
           Pfam profile PF00633: Helix-hairpin-helix motif
          Length = 314

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 398 GLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKN 559
           GL ++++S  Y+KT     +   K +S I    A  SASS++  T  L  P +N
Sbjct: 93  GLPDIEDSP-YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 507 DTPAVMPPMIEDVFSAVVFITDSVFWY 427
           D P+++ P I+ VFSA+      V WY
Sbjct: 417 DQPSLLAPNIQMVFSALALAQSEVLWY 443


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 100 HSFHTVRVFHCKI*AVFKQLKKQCQ 174
           H   TV VF+C I  V K+LKKQ Q
Sbjct: 885 HPNSTVGVFYCGIQTVAKELKKQAQ 909


>At4g10270.1 68417.m01688 wound-responsive family protein similar to
           wound induced protein (GI:19320) [Lycopersicon
           esculentum]
          Length = 90

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +2

Query: 341 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 478
           LK +LG+  W  I   VNQ L+N   S    K  S    +A  TSS
Sbjct: 20  LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65


>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 682

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 529 NSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALR 642
           N  +F  IEE +G   EN+  K++S++ +  S  +  R
Sbjct: 215 NEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYR 252


>At4g26050.1 68417.m03750 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
          Length = 383

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 383 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA-GVSASSVRCATR 535
           E V QGL+ +K+    + TES  KT  +K S  IG +   G+S+S  R   R
Sbjct: 286 EVVEQGLEALKQYMSEKMTESYKKTPTKKKSWGIGKLVKYGLSSSPGRSTGR 337


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = +2

Query: 320 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 493
           +I ++S++ RKLG+ +W+E TE ++      +++ +Y    S+   T+E+      G+
Sbjct: 265 EIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILEFAWGL 321


>At1g02330.1 68414.m00178 expressed protein contains similarity to
           hepatocellular carcinoma-associated antigen 59
           GI:7158847 from [Homo sapiens]
          Length = 279

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +2

Query: 266 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 436
           EL RVEDE+  +   L+ K ++SS+       T   E+   +   LKN++E++  +K
Sbjct: 126 ELKRVEDELYKIPDHLKVK-KRSSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKK 181


>At3g17520.1 68416.m02238 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to PIR|S04045|S04045 embryonic
           abundant protein D-29 [Gossypium hirsutum]; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 298

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +1

Query: 508 RKLGQMRNSESFRSIEERVGSAYENVKGKV-----ASRSNSTQSFDEA 636
           ++  + +  E+  + +E+ GSAYE  K KV     + +  ++QS+D A
Sbjct: 80  KEAAKRKAEEAVGAAKEKAGSAYETAKSKVEEGLASVKDKASQSYDSA 127


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
 Frame = +2

Query: 392  NQGLKNVKESQVYQKTES--VIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAP--SKN 559
            N+ L  V++  V     +  V+K T   T+  +   T+G SA ++  + RS S+P     
Sbjct: 1225 NEKLSKVRDEGVVPTVHAFNVLKATFNDTN--LSTDTSGFSAEAMIVSIRSFSSPYWEVR 1282

Query: 560  ASVRLMKTSRVK*LLD--RTRLRASTRRCVT 646
             S  L  T+ V+ ++     + R STRR +T
Sbjct: 1283 NSATLAYTALVRRMIGFLNVQKRGSTRRALT 1313


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,142
Number of Sequences: 28952
Number of extensions: 239430
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)