BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20929 (651 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g37020.1 68414.m04616 Ulp1 protease family protein 35 0.041 At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 32 0.38 At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 30 1.5 At1g05900.2 68414.m00619 endonuclease-related similar to endonuc... 29 2.0 At1g05900.1 68414.m00618 endonuclease-related similar to endonuc... 29 2.0 At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 29 2.7 At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 29 2.7 At4g10270.1 68417.m01688 wound-responsive family protein similar... 29 3.5 At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai... 28 4.7 At4g26050.1 68417.m03750 leucine-rich repeat family protein cont... 28 4.7 At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati... 28 4.7 At1g02330.1 68414.m00178 expressed protein contains similarity t... 28 4.7 At3g17520.1 68416.m02238 late embryogenesis abundant domain-cont... 28 6.2 At3g55160.1 68416.m06126 expressed protein 27 8.2 >At1g37020.1 68414.m04616 Ulp1 protease family protein Length = 611 Score = 35.1 bits (77), Expect = 0.041 Identities = 23/83 (27%), Positives = 41/83 (49%) Frame = +2 Query: 281 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTT 460 EDE LQ KI+ ++ K+K + K+ ++ + + VKE +V T V+K T Sbjct: 253 EDETPNKELELQLKIKDATKGKKKKVAIMPKKASKIPKKKMAKVKEMKV--STPKVLKKT 310 Query: 461 AEKTSSIIGGITAGVSASSVRCA 529 + +G +T V A +++ A Sbjct: 311 MRRDDDYVGDVTEKVVADTLKMA 333 >At1g06530.1 68414.m00692 myosin heavy chain-related similar to myosin heavy chain (GI:1408194) {Placopecten magellanicus}; similar to Myosin heavy chain, clone 203 (Fragment) (SP:P39922){Hydra attenuata}; contains one transmembrane domain Length = 323 Score = 31.9 bits (69), Expect = 0.38 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +2 Query: 269 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESV 448 + +E E+A LRTV + ++ +L+ KLG KE+ E + + + E Sbjct: 146 IEELEKEVAGLRTVKEENEKRMKELESKLGALEVKELDEKNKKFRAEEEMREKIDNKEKE 205 Query: 449 IKTTAEKTSSIIGGITAG 502 + EK S+ + G Sbjct: 206 VHDLKEKIKSLESDVAKG 223 >At1g34320.1 68414.m04259 expressed protein contains Pfam domain PF05003: protein of unknown function (DUF668) Length = 657 Score = 29.9 bits (64), Expect = 1.5 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +2 Query: 278 VEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV 412 V D +A LRT L+S+ + +LK+K ++W I E+V + L +V Sbjct: 308 VGDTLAILRTELKSQKKHVRNLKKK---SLWSRILEEVMEKLVDV 349 >At1g05900.2 68414.m00619 endonuclease-related similar to endonuclease III [Homo sapiens] GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motif Length = 386 Score = 29.5 bits (63), Expect = 2.0 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +2 Query: 398 GLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKN 559 GL ++++S Y+KT + K +S I A SASS++ T L P +N Sbjct: 93 GLPDIEDSP-YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143 >At1g05900.1 68414.m00618 endonuclease-related similar to endonuclease III [Homo sapiens] GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motif Length = 314 Score = 29.5 bits (63), Expect = 2.0 Identities = 18/54 (33%), Positives = 28/54 (51%) Frame = +2 Query: 398 GLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAPSKN 559 GL ++++S Y+KT + K +S I A SASS++ T L P +N Sbjct: 93 GLPDIEDSP-YKKTNGTASSRTRKLNSYIKSTEASPSASSIK--TAGLGIPPEN 143 >At2g35110.1 68415.m04307 HEM protein-related weak similarity to Membrane-associated protein Hem (Dhem-2) (Swiss-Prot:P55162) [Drosophila melanogaster]; weak similarity to Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated protein HEM-2) (Swiss-Prot:P55161) [Rattus norvegicus] Length = 1339 Score = 29.1 bits (62), Expect = 2.7 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -1 Query: 507 DTPAVMPPMIEDVFSAVVFITDSVFWY 427 D P+++ P I+ VFSA+ V WY Sbjct: 417 DQPSLLAPNIQMVFSALALAQSEVLWY 443 >At1g19230.1 68414.m02393 respiratory burst oxidase protein E (RbohE) / NADPH oxidase nearly identical to respiratory burst oxidase protein E GI:3242787 [gi:3242787] from [Arabidopsis thaliana] Length = 926 Score = 29.1 bits (62), Expect = 2.7 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = +1 Query: 100 HSFHTVRVFHCKI*AVFKQLKKQCQ 174 H TV VF+C I V K+LKKQ Q Sbjct: 885 HPNSTVGVFYCGIQTVAKELKKQAQ 909 >At4g10270.1 68417.m01688 wound-responsive family protein similar to wound induced protein (GI:19320) [Lycopersicon esculentum] Length = 90 Score = 28.7 bits (61), Expect = 3.5 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = +2 Query: 341 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSS 478 LK +LG+ W I VNQ L+N S K S +A TSS Sbjct: 20 LKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSS 65 >At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain, PF03109: ABC1 family Length = 682 Score = 28.3 bits (60), Expect = 4.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +1 Query: 529 NSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALR 642 N +F IEE +G EN+ K++S++ + S + R Sbjct: 215 NEVAFNIIEEELGQPLENIFSKISSQTIAAASLGQVYR 252 >At4g26050.1 68417.m03750 leucine-rich repeat family protein contains Pfam PF00560: Leucine Rich Repeat domains; Length = 383 Score = 28.3 bits (60), Expect = 4.7 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +2 Query: 383 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA-GVSASSVRCATR 535 E V QGL+ +K+ + TES KT +K S IG + G+S+S R R Sbjct: 286 EVVEQGLEALKQYMSEKMTESYKKTPTKKKSWGIGKLVKYGLSSSPGRSTGR 337 >At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative similar to UDP-glucose glucosyltransferase GI:3928543 from [Arabidopsis thaliana] Length = 489 Score = 28.3 bits (60), Expect = 4.7 Identities = 15/58 (25%), Positives = 33/58 (56%) Frame = +2 Query: 320 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGI 493 +I ++S++ RKLG+ +W+E TE ++ +++ +Y S+ T+E+ G+ Sbjct: 265 EIDKNSEI-RKLGLNLWEEETESLDWLDTKAEKAVIYVNFGSLTVLTSEQILEFAWGL 321 >At1g02330.1 68414.m00178 expressed protein contains similarity to hepatocellular carcinoma-associated antigen 59 GI:7158847 from [Homo sapiens] Length = 279 Score = 28.3 bits (60), Expect = 4.7 Identities = 18/57 (31%), Positives = 31/57 (54%) Frame = +2 Query: 266 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 436 EL RVEDE+ + L+ K ++SS+ T E+ + LKN++E++ +K Sbjct: 126 ELKRVEDELYKIPDHLKVK-KRSSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKK 181 >At3g17520.1 68416.m02238 late embryogenesis abundant domain-containing protein / LEA domain-containing protein low similarity to PIR|S04045|S04045 embryonic abundant protein D-29 [Gossypium hirsutum]; contains Pfam profile PF02987: Late embryogenesis abundant protein Length = 298 Score = 27.9 bits (59), Expect = 6.2 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%) Frame = +1 Query: 508 RKLGQMRNSESFRSIEERVGSAYENVKGKV-----ASRSNSTQSFDEA 636 ++ + + E+ + +E+ GSAYE K KV + + ++QS+D A Sbjct: 80 KEAAKRKAEEAVGAAKEKAGSAYETAKSKVEEGLASVKDKASQSYDSA 127 >At3g55160.1 68416.m06126 expressed protein Length = 2149 Score = 27.5 bits (58), Expect = 8.2 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Frame = +2 Query: 392 NQGLKNVKESQVYQKTES--VIKTTAEKTSSIIGGITAGVSASSVRCATRSLSAP--SKN 559 N+ L V++ V + V+K T T+ + T+G SA ++ + RS S+P Sbjct: 1225 NEKLSKVRDEGVVPTVHAFNVLKATFNDTN--LSTDTSGFSAEAMIVSIRSFSSPYWEVR 1282 Query: 560 ASVRLMKTSRVK*LLD--RTRLRASTRRCVT 646 S L T+ V+ ++ + R STRR +T Sbjct: 1283 NSATLAYTALVRRMIGFLNVQKRGSTRRALT 1313 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,447,142 Number of Sequences: 28952 Number of extensions: 239430 Number of successful extensions: 806 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 791 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 806 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1354097952 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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