Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20928
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   153   2e-38
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.63 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    27   2.6  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   5.9  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   7.8  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  153 bits (371), Expect = 2e-38
 Identities = 70/106 (66%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
           K +   E  L    IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 394 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWGT   + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score =  102 bits (245), Expect = 4e-23
 Identities = 43/62 (69%), Positives = 53/62 (85%)
 Frame = +3

Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
           G  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGST 203

Query: 684 GT 689
            T
Sbjct: 204 KT 205



 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SL  K
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 625 RSFFRWLVYRTATPQLVVQL 684
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 193 RPSCTRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 309
           R    +++NR+T +  LV  T+      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 518 KATHRPLQGHRQVWFCNSPADSCPSWYWN 604
           +A    L G  +   C   + SCPS++WN
Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 480 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 346
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,814
Number of Sequences: 5004
Number of extensions: 58986
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)