Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20928
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 146 2e-35
07_01_0756 + 5819367-5820038,5820847-5821005 141 5e-34
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 75 4e-14
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 48 7e-06
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.5
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 146 bits (353), Expect = 2e-35
Identities = 68/92 (73%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEV
Sbjct: 72 VKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEV 130
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 131 ATAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Score = 109 bits (261), Expect = 3e-24
Identities = 47/62 (75%), Positives = 57/62 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGST 213
Query: 684 GT 689
T
Sbjct: 214 KT 215
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/36 (58%), Positives = 30/36 (83%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++++WVPVTKLGRLV+EG+ K+E IYL SL K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 141 bits (341), Expect = 5e-34
Identities = 69/106 (65%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Frame = +1
Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393
K + E L +KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 394 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Score = 110 bits (265), Expect = 9e-25
Identities = 48/62 (77%), Positives = 57/62 (91%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGST 216
Query: 684 GT 689
T
Sbjct: 217 KT 218
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +2
Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++++WVPVTKLGRLV+E KI K+E IYL SL K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 75.4 bits (177), Expect = 4e-14
Identities = 33/57 (57%), Positives = 44/57 (77%)
Frame = +3
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGSTGT 689
KPHTV CKV K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST T
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKT 103
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 373 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 468
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 48.0 bits (109), Expect = 7e-06
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 301 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 480
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 481 LPVRRGYWGTRSESH-TP 531
+ V + T H TP
Sbjct: 231 VTVPLTKYSTFPHRHCTP 248
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 435 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 319
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,620,026
Number of Sequences: 37544
Number of extensions: 437580
Number of successful extensions: 1262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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