Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20928
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   141   5e-34
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    28   5.5  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    28   5.5  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  141 bits (341), Expect = 5e-34
 Identities = 69/86 (80%), Positives = 76/86 (88%)
 Frame = +1

Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143

Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR 513
           ATAIRGAI+ AKL+V+PVRRGYWG +
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score =  115 bits (277), Expect = 3e-26
 Identities = 51/62 (82%), Positives = 55/62 (88%)
 Frame = +3

Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
           G KIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+ +GST
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGST 226

Query: 684 GT 689
            T
Sbjct: 227 AT 228



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 158 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
           E + EW PVTKLGRLV+E KI  LE IYL SL  K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 486 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 665
           +S++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y 
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252

Query: 666 STRGST 683
              GST
Sbjct: 253 KVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 486 SSKRLLGYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYT 665
           +S++L   ++ +  T+      +C +  V     PRG G+   P   K+ +  G++D Y 
Sbjct: 193 ASRKLFHVELHEGRTIYQDFYAECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYV 252

Query: 666 STRGST 683
              GST
Sbjct: 253 KVEGST 258


>Z70681-3|CAA94579.2|  403|Caenorhabditis elegans Hypothetical
           protein C30F2.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 498 TSSNW*NRQLSKDNSASNGSG 436
           TS+NW N QL   NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 455
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 312 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 455
           +++  CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 53  NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,570
Number of Sequences: 27780
Number of extensions: 354869
Number of successful extensions: 1162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)