Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20928
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    25   0.51 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.51 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.51 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.51 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   6.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEII 276
           KN QTREH L+ FT+   ++I
Sbjct: 129 KNGQTREHALLAFTLGVKQLI 149


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEII 276
           KN QTREH L+ FT+   ++I
Sbjct: 56  KNGQTREHALLAFTLGVKQLI 76


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEII 276
           KN QTREH L+ FT+   ++I
Sbjct: 72  KNGQTREHALLAFTLGVKQLI 92


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 214 KNRQTREHLLVFFTIKEFEII 276
           KN QTREH L+ FT+   ++I
Sbjct: 129 KNGQTREHALLAFTLGVKQLI 149


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 KEKSTNSRAFTCFLYNQRIRDH*FLPRPV 296
           KEK    R  +C L  +R  +  FL RP+
Sbjct: 1   KEKHLTQRINSCDLLKKRNENDPFLKRPI 29


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +1

Query: 187 QTRPSCTRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 363
           +T PS   +  R+  EH L  F   ++  + +FL    N        ++K T   Q  R
Sbjct: 192 ETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTDTAGVIKKLTEDTQERR 250


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 395 TVILVWV*SAARKSPL 442
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 537 CKVTGKCGSVTVRLIPAPRGT 599
           C + G CG +   +   P+GT
Sbjct: 75  CPICGACGDIAHTVKYCPKGT 95


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 17/74 (22%), Positives = 29/74 (39%)
 Frame = -3

Query: 638 LKKLLRNWRRHNSSTTRGRNQPDCYRTTLAGDLARDGVWLSDLVPQ*PLRTGKTDNLARI 459
           L + L   R   +S  R   +      TL G   R+G+ LS   P        T+ L  +
Sbjct: 525 LDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAV 584

Query: 458 IAPRMAVATSLLHF 417
               M++  + +H+
Sbjct: 585 RLGHMSINQAAIHY 598


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,826
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)