Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20928
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 159 1e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 159 2e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 158 4e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 158 4e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 158 4e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 158 4e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.72
At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containi... 29 3.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.1
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea... 28 5.1
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 5.1
At1g72390.1 68414.m08373 expressed protein 28 5.1
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 28 6.7
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 28 6.7
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 6.7
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 8.9
At3g01450.1 68416.m00069 expressed protein 27 8.9
At2g37930.1 68415.m04656 expressed protein 27 8.9
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 27 8.9
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 159 bits (387), Expect = 1e-39
Identities = 74/104 (71%), Positives = 87/104 (83%), Gaps = 1/104 (0%)
Frame = +1
Query: 220 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 399
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 400 HIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
H+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 165 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 224
Query: 684 GT 689
T
Sbjct: 225 KT 226
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV G I ++E IYL SL K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 159 bits (386), Expect = 2e-39
Identities = 71/92 (77%), Positives = 84/92 (91%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+P+RRGYWG + + HT
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 156 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 215
Query: 684 GT 689
T
Sbjct: 216 KT 217
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++++WVPVTKLGRLV+EGKI K+E IYL SL K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 72/92 (78%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 684 GT 689
T
Sbjct: 224 KT 225
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 72/92 (78%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 684 GT 689
T
Sbjct: 224 KT 225
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 72/92 (78%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 684 GT 689
T
Sbjct: 224 KT 225
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 158 bits (383), Expect = 4e-39
Identities = 72/92 (78%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 435
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 436 ATAIRGAIILAKLSVLPVRRGYWGTR-SESHT 528
ATAIRGAIILAKLSV+PVRRGYWG + + HT
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 109 bits (263), Expect = 1e-24
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3
Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGST 683
G KIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST
Sbjct: 164 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGST 223
Query: 684 GT 689
T
Sbjct: 224 KT 225
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 161 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262
++ +WVPVTKLGRLV + KI KLE IYL SL K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 304 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 483
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 484 PV 489
V
Sbjct: 209 QV 210
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +3
Query: 519 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGS 680
K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGS 267
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.1 bits (67), Expect = 0.72
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 350 PARVCFCTGMIFRTSSFRDGPRKKSMISNSLIVKKTSK 237
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g22690.1 68416.m02863 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 978
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 180 LSPNSAVLYAKEKSTNSRAF-TCFLYNQRIRDH 275
L ++ +AKE NS ++ TCF+YN IR +
Sbjct: 77 LGTRESLSFAKEVFENSESYGTCFMYNSLIRGY 109
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 370 AFVAIGDNNGHIGLGVKCSKE 432
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]
Length = 1354
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 553 LPVTLQGTVCGFPILYPSNLF 491
LP+ LQG + GF + PSN++
Sbjct: 429 LPIVLQGAITGFILPLPSNIY 449
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3
Query: 521 LSDLVPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 342
L L+ Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 341 VCFCTGMIFRTSSFR 297
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 684 QLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQNHT 553
QL H+ + P+ QPS++ A Q Q Q HE + A Q T
Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982
>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL----GYKIGKPHT 530
CC W+ +R GC + S+ C+S Y C C S+ LL K+ KP T
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120
>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +3
Query: 375 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL----GYKIGKPHT 530
CC W+ +R GC + S+ C+S Y C C S+ LL K+ KP T
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLLEKVVKVKVAKPAT 120
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 525 HTVPCKVTGKCGSVTVRL 578
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 3 LSEPIVQQWRTLLQP 47
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 455 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 333
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 190 TRPSCTRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 324
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 525 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSTRGS 680
HT+ + + L PAP TG+ + V K +L +AG ++ + GS
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGS 478
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,292,558
Number of Sequences: 28952
Number of extensions: 332632
Number of successful extensions: 938
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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