Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20927
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 51 1e-06
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 50 2e-06
05_03_0443 + 14057080-14057201,14058566-14058698,14058758-140587... 50 2e-06
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 45 5e-05
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 29 2.6
12_01_0478 + 3752617-3753006,3753708-3753780,3753892-3753959,375... 29 4.5
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 29 4.5
08_02_1493 + 27512473-27512557,27512670-27513351,27513459-275135... 28 5.9
08_02_1372 + 26500093-26500154,26500733-26500933,26501858-265019... 28 5.9
05_04_0454 + 21383068-21384525 28 7.8
03_01_0217 - 1712979-1713794 28 7.8
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DSFVSRLRSEGDVTAPVASPAQ-HDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFEL 436
+ F+ L++EG+V P+ P+P V + EE+LN+ RDG + F++
Sbjct: 536 NQFLESLKAEGEVILEDVQPSSVQSRASPLPPSDP-VTVTIEEKLNVTVKRDGGVNNFDV 594
Query: 437 SGLLTLRISNEQFGRIHVXVDNKD 508
G L L++ N+ G I + ++N+D
Sbjct: 595 QGTLALQVLNDADGFIQLQIENQD 618
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATTNDDKL 666
THPN++K+ F S V+G K RPFP ++ ++KWR+ ++ L
Sbjct: 626 THPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIQGMDESSL 672
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +2
Query: 260 DSFVSRLRSEGDVTAPVASPAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFELS 439
+ F+ L++EG+V P+ + + + EE+LN+ RDG + F++
Sbjct: 276 NQFLESLKAEGEVILEDTQPSATQSRSSYIPPSDPITVTIEEKLNVTVKRDGGVSNFDIQ 335
Query: 440 GLLTLRISNEQFGRIHVXVDNKD 508
G L L+I N+ G I + ++N+D
Sbjct: 336 GTLALQILNDTDGFIQLQIENQD 358
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATTNDDKL 666
THPN++KE F S ++G K RPFP ++ ++KWR+ N+ L
Sbjct: 366 THPNINKELFNSQQIVGAKDPNRPFPSGQNETPLVKWRIQELNESSL 412
>05_03_0443 +
14057080-14057201,14058566-14058698,14058758-14058797,
14059175-14059398,14059904-14059976,14060364-14060614,
14060892-14061060,14061307-14061611,14062023-14062209,
14062311-14062464,14063186-14063248,14063337-14063433,
14063530-14063619
Length = 635
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DSFVSRLRSEGDVTAPVASPAQHDAG-KPVPADHKDVHLRFEERLNLIAGRDGDIQTFEL 436
+ F+ L++EG+V P+ + P+P V + EE+LN+ RDG + F++
Sbjct: 362 NQFLESLKAEGEVILEDVQPSSVQSRVSPLPPSDP-VTVTIEEKLNVTVKRDGGVNNFDV 420
Query: 437 SGLLTLRISNEQFGRIHVXVDNKD 508
G L L++ N+ G I + ++N+D
Sbjct: 421 QGTLALQVLNDTDGFIQLQIENQD 444
Score = 44.4 bits (100), Expect = 8e-05
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATTNDDKL 666
THPN++K+ F S V+G K RPFP ++ ++KWR+ ++ L
Sbjct: 452 THPNINKDLFNSQQVVGAKDPNRPFPSGQNETPLVKWRIHGMDESSL 498
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 DSFVSRLRSEGDVTAPVASPAQ-HDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFEL 436
+ F+ L++EG+V P P+P V + EE+LN+ RDG + F++
Sbjct: 402 NQFLESLKAEGEVIMEDFQPCSLQSRSSPLPPSDP-VTVAVEEKLNVAVKRDGGVNNFDV 460
Query: 437 SGLLTLRISNEQFGRIHVXVDNKD 508
G L L + N+ G I + ++++D
Sbjct: 461 QGTLALLVLNDADGLILLQIESQD 484
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPM-HSDVGVLKWRLATTNDDKL 666
THPN++K+ F S ++G K RPFP ++ ++KWR+ N+ L
Sbjct: 492 THPNINKDLFNSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSL 538
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 281 RSEGDVTAPVA-SPAQHDAGKPVPADHKDV-HLRFEERLNLIAGRDGDIQTFE 433
R EGD + V S + D + VP +K + H E L IAG+ G + T+E
Sbjct: 484 REEGDQSQEVPISREEGDQSQEVPFSNKQMDHNLLEHELVSIAGKGGSLGTYE 536
>12_01_0478 +
3752617-3753006,3753708-3753780,3753892-3753959,
3754577-3754665,3755108-3755305,3755383-3755527,
3755673-3755840,3756174-3756341,3756527-3756717,
3757128-3757266
Length = 542
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/94 (22%), Positives = 42/94 (44%)
Frame = -2
Query: 348 GTGLPASCCAGDATGAVTSPSLRSRDTNESALCRGCRASWQNDPLYEYLWPVSLESSRQ* 169
G G+ G G +T SLR R +A + + +++ ++E LWP + +
Sbjct: 56 GVGVGGRVEVGREVGVMTVASLRRRRAAAAAAPQP-GSVYRSHLVFERLWPDIRDDASSA 114
Query: 168 IQMETTRTSSSYQSHCRRTSVSAAAGHVWPPPIS 67
++ +S+S++ TS G +W P ++
Sbjct: 115 SAAASSLSSTSWRRSMLMTSHYQNPGELWMPCVN 148
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 206 YSYSGSFCHEARQPRHNADSFVSRLRSEGDVTAPVASPAQHDA 334
Y Y+ +CH + A + V+ +GD ASPA+ +A
Sbjct: 771 YPYAVFYCHSTKPTAAYAVTLVAATTGDGDGEGEAASPAKMEA 813
>08_02_1493 +
27512473-27512557,27512670-27513351,27513459-27513522,
27513734-27513961
Length = 352
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 660 VIVGSGQPPLEDSDVAVHREGALSLLQPNHAGRAERFF 547
V+ GSG PPLE + A+ G+ SL P +G + RF+
Sbjct: 52 VLSGSGTPPLETTGFALSPGGSRSLYAP--SGWSGRFW 87
>08_02_1372 +
26500093-26500154,26500733-26500933,26501858-26501936,
26502652-26502752,26503417-26503516,26503893-26503934,
26504026-26504067,26504352-26504509,26504708-26504780
Length = 285
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 233 EARQPRHNADSFVSRLRSEGDVTAPVASPAQH 328
E +QP H + F L + G+ T + PA+H
Sbjct: 236 EVQQPLHGGNGFFHPLDAAGEPTLQIGYPAEH 267
>05_04_0454 + 21383068-21384525
Length = 485
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 182 DSNDTGQRYSYSGSFCHEARQPRHNAD 262
++N QR+ S CH+ RQP +N D
Sbjct: 304 NNNGRDQRHQVYSSNCHDQRQPVYNND 330
>03_01_0217 - 1712979-1713794
Length = 271
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 260 DSFVSRLRSEGDVTAPVASPAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQ 424
D F +R V P + + D P PA DV R EE ++ G D+Q
Sbjct: 39 DPFEEVMRCLSAVDDPFLAAFKLDCSPPTPAADADVDSRSEEHMHADVGGGLDLQ 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,636,832
Number of Sequences: 37544
Number of extensions: 394046
Number of successful extensions: 1649
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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