Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20927
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   7e-14
SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)                      29   2.6  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_7480| Best HMM Match : DUF1299 (HMM E-Value=4.8)                    28   7.9  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 42/106 (39%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
 Frame = +2

Query: 254  NADSFVSRLRSEGD--VTAPVASPAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQT 427
            + DSFV +LRSEG   ++    S AQ  A  PV  +   VHL+ EE++ L AGRDG +Q 
Sbjct: 709  DVDSFVDKLRSEGTEVISHKQKSLAQKPAAAPV-VNQSSVHLKTEEKITLTAGRDGGLQN 767

Query: 428  FELSGLLTLRISNEQFGRIHVXVDNKDRDRYSCRPIQTWTKKRSAR 565
             E+ G++ LRIS+ QF +I + V+N D   +  +      KK  A+
Sbjct: 768  MEIRGIVLLRISDSQFAQIKLAVENNDDKGFQIQTHPNVDKKSFAQ 813



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/49 (53%), Positives = 37/49 (75%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
           THPNVDK++F    ++ LKQA + FP +SD+G+L+WR+ TT D+ L PL
Sbjct: 802 THPNVDKKSFAQDNILVLKQAGKSFPTNSDIGLLRWRMQTT-DESLMPL 849


>SB_21771| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1691

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 238  SFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
            SF+   P ++ ++  + G  S  DSD DD+D++ L  PL
Sbjct: 1108 SFIMNTPDLKTNVKQIYGDLS--DSDFDDDDVILLESPL 1144


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 549 RSVPLDRRDWAEAGS----TPLPDAQRRRSPQVEAGHY 650
           RS    RR   E GS    TP PD  R+R+P+  AG Y
Sbjct: 401 RSAERGRRREGERGSSGPRTPSPDRGRQRTPEGAAGRY 438


>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = +2

Query: 290 GDVTAPVASPAQHDAGKPVPADHKDVH---LRFEERLNLIAGRDGDIQTFELSGLLTLRI 460
           G     + S   H   K +    +  +    R + +L +  G DG IQ F+L+    LR 
Sbjct: 59  GSTRVQIYSSTTHQVNKTISRFKEVAYCGTFRSDGQLMIAGGEDGLIQLFDLNSRAVLRQ 118

Query: 461 SNEQFGRIHV 490
                G +HV
Sbjct: 119 FKGHSGPVHV 128


>SB_7480| Best HMM Match : DUF1299 (HMM E-Value=4.8)
          Length = 131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 278 LRSEGDVTAPVAS-PAQHDAGKPVPADHKDVHLRFEERLNL 397
           L +E D TAP A+   ++ AGKP+P D   + L  E  L++
Sbjct: 43  LLAEQDPTAPKANFDLEYWAGKPIPGDLYRIKLHTEVLLSM 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,103,267
Number of Sequences: 59808
Number of extensions: 408344
Number of successful extensions: 1295
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)