Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20927
(676 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81197-1|CAA57071.1| 511|Homo sapiens archain protein. 70 7e-12
BC093638-1|AAH93638.1| 511|Homo sapiens archain protein. 70 7e-12
BC093636-1|AAH93636.1| 511|Homo sapiens archain 1 protein. 70 7e-12
X81198-1|CAA57072.1| 472|Homo sapiens archain protein. 70 9e-12
M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth f... 36 0.17
J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth f... 36 0.17
BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth... 36 0.17
AB209657-1|BAD92894.1| 777|Homo sapiens platelet-derived growth... 36 0.17
BX537953-1|CAD97920.1| 579|Homo sapiens hypothetical protein pr... 31 3.7
BC032620-1|AAH32620.1| 509|Homo sapiens KLHL18 protein protein. 31 3.7
BC016388-1|AAH16388.1| 339|Homo sapiens KLHL18 protein protein. 31 3.7
AK023765-1|BAB14670.1| 237|Homo sapiens protein ( Homo sapiens ... 31 3.7
AB062478-1|BAB93503.1| 509|Homo sapiens OK/SW-CL.74 protein. 31 3.7
AB018338-1|BAA34515.1| 465|Homo sapiens KIAA0795 protein protein. 31 3.7
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein. 30 8.6
BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for IM... 30 8.6
BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for IM... 30 8.6
BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein. 30 8.6
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 30 8.6
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 30 8.6
>X81197-1|CAA57071.1| 511|Homo sapiens archain protein.
Length = 511
Score = 70.1 bits (164), Expect = 7e-12
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 DSFVSRLRSEGD-VTAPVASPAQHDAGK--PVPADHKDVHLRFEERLNLIAGRDGDIQTF 430
D+FV +L+SEG+ + + +A K P + + VH++ EE++ L GRDG +Q
Sbjct: 236 DNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNM 295
Query: 431 ELSGLLTLRISNEQFGRIHVXVDNKDR 511
EL G++ LRIS++++GRI + V+N+D+
Sbjct: 296 ELHGMIMLRISDDKYGRIRLHVENEDK 322
Score = 63.7 bits (148), Expect = 6e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
THPNVDK+ F + +IGLK ++ FP++SDVGVLKWRL TT ++ PL
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTT-EESFIPL 376
>BC093638-1|AAH93638.1| 511|Homo sapiens archain protein.
Length = 511
Score = 70.1 bits (164), Expect = 7e-12
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 DSFVSRLRSEGD-VTAPVASPAQHDAGK--PVPADHKDVHLRFEERLNLIAGRDGDIQTF 430
D+FV +L+SEG+ + + +A K P + + VH++ EE++ L GRDG +Q
Sbjct: 236 DNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNM 295
Query: 431 ELSGLLTLRISNEQFGRIHVXVDNKDR 511
EL G++ LRIS++++GRI + V+N+D+
Sbjct: 296 ELHGMIMLRISDDKYGRIRLHVENEDK 322
Score = 63.7 bits (148), Expect = 6e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
THPNVDK+ F + +IGLK ++ FP++SDVGVLKWRL TT ++ PL
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTT-EESFIPL 376
>BC093636-1|AAH93636.1| 511|Homo sapiens archain 1 protein.
Length = 511
Score = 70.1 bits (164), Expect = 7e-12
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 DSFVSRLRSEGD-VTAPVASPAQHDAGK--PVPADHKDVHLRFEERLNLIAGRDGDIQTF 430
D+FV +L+SEG+ + + +A K P + + VH++ EE++ L GRDG +Q
Sbjct: 236 DNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNM 295
Query: 431 ELSGLLTLRISNEQFGRIHVXVDNKDR 511
EL G++ LRIS++++GRI + V+N+D+
Sbjct: 296 ELHGMIMLRISDDKYGRIRLHVENEDK 322
Score = 63.7 bits (148), Expect = 6e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
THPNVDK+ F + +IGLK ++ FP++SDVGVLKWRL TT ++ PL
Sbjct: 329 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTT-EESFIPL 376
>X81198-1|CAA57072.1| 472|Homo sapiens archain protein.
Length = 472
Score = 69.7 bits (163), Expect = 9e-12
Identities = 33/87 (37%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Frame = +2
Query: 260 DSFVSRLRSEGD-VTAPVASPAQHDAGK--PVPADHKDVHLRFEERLNLIAGRDGDIQTF 430
D+FV +L+SEG+ + + +A K P + + VH++ EE++ L GRDG +Q
Sbjct: 197 DNFVDKLKSEGETIMSSSMGKRTSEATKMHAPPINMESVHMKIEEKITLTCGRDGGLQNM 256
Query: 431 ELSGLLTLRISNEQFGRIHVXVDNKDR 511
EL G++ LRIS++ +GRI + V+N+D+
Sbjct: 257 ELHGMIMLRISDDNYGRIRLHVENEDK 283
Score = 63.7 bits (148), Expect = 6e-10
Identities = 28/49 (57%), Positives = 37/49 (75%)
Frame = +1
Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
THPNVDK+ F + +IGLK ++ FP++SDVGVLKWRL TT ++ PL
Sbjct: 290 THPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTT-EESFIPL 337
>M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth factor
receptor protein.
Length = 1106
Score = 35.5 bits (78), Expect = 0.17
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = -1
Query: 262 VRVVPRLPSFMAERPTVRVSLAGVVGIFSAID-SDGDDEDIVELPKPLPKDICERG---G 95
+R RLP F R + S +++A+ ++GD++ I+ LP P P ++ + G G
Sbjct: 986 LRSQARLPGFHGLRSPLDTSSV----LYTAVQPNEGDNDYIIPLPDPKP-EVADEGPLEG 1040
Query: 94 WPRLAASNLSRCNSLGVRACGS 29
P LA+S L+ N+ +C S
Sbjct: 1041 SPSLASSTLNEVNTSSTISCDS 1062
>J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth factor
receptor protein.
Length = 1106
Score = 35.5 bits (78), Expect = 0.17
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = -1
Query: 262 VRVVPRLPSFMAERPTVRVSLAGVVGIFSAID-SDGDDEDIVELPKPLPKDICERG---G 95
+R RLP F R + S +++A+ ++GD++ I+ LP P P ++ + G G
Sbjct: 986 LRSQARLPGFHGLRSPLDTSSV----LYTAVQPNEGDNDYIIPLPDPKP-EVADEGPLEG 1040
Query: 94 WPRLAASNLSRCNSLGVRACGS 29
P LA+S L+ N+ +C S
Sbjct: 1041 SPSLASSTLNEVNTSSTISCDS 1062
>BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth
factor receptor, beta polypeptide protein.
Length = 1106
Score = 35.5 bits (78), Expect = 0.17
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = -1
Query: 262 VRVVPRLPSFMAERPTVRVSLAGVVGIFSAID-SDGDDEDIVELPKPLPKDICERG---G 95
+R RLP F R + S +++A+ ++GD++ I+ LP P P ++ + G G
Sbjct: 986 LRSQARLPGFHGLRSPLDTSSV----LYTAVQPNEGDNDYIIPLPDPKP-EVADEGPLEG 1040
Query: 94 WPRLAASNLSRCNSLGVRACGS 29
P LA+S L+ N+ +C S
Sbjct: 1041 SPSLASSTLNEVNTSSTISCDS 1062
>AB209657-1|BAD92894.1| 777|Homo sapiens platelet-derived growth
factor receptor beta precursor variant protein.
Length = 777
Score = 35.5 bits (78), Expect = 0.17
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Frame = -1
Query: 262 VRVVPRLPSFMAERPTVRVSLAGVVGIFSAID-SDGDDEDIVELPKPLPKDICERG---G 95
+R RLP F R + S +++A+ ++GD++ I+ LP P P ++ + G G
Sbjct: 657 LRSQARLPGFHGLRSPLDTSSV----LYTAVQPNEGDNDYIIPLPDPKP-EVADEGPLEG 711
Query: 94 WPRLAASNLSRCNSLGVRACGS 29
P LA+S L+ N+ +C S
Sbjct: 712 SPSLASSTLNEVNTSSTISCDS 733
>BX537953-1|CAD97920.1| 579|Homo sapiens hypothetical protein
protein.
Length = 579
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 276 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 317
>BC032620-1|AAH32620.1| 509|Homo sapiens KLHL18 protein protein.
Length = 509
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 206 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 247
>BC016388-1|AAH16388.1| 339|Homo sapiens KLHL18 protein protein.
Length = 339
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 36 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 77
>AK023765-1|BAB14670.1| 237|Homo sapiens protein ( Homo sapiens
cDNA FLJ13703 fis, clone PLACE2000246, weakly similar to
RING CANAL PROTEIN. ).
Length = 237
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 122 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 163
>AB062478-1|BAB93503.1| 509|Homo sapiens OK/SW-CL.74 protein.
Length = 509
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 206 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 247
>AB018338-1|BAA34515.1| 465|Homo sapiens KIAA0795 protein protein.
Length = 465
Score = 31.1 bits (67), Expect = 3.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -1
Query: 250 PRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELPKPL 122
P LP+F RP S+AG++ ++S GD ++VE+ P+
Sbjct: 162 PHLPAFRT-RPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPI 203
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>BC107801-1|AAI07802.1| 383|Homo sapiens PRPF38B protein protein.
Length = 383
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>BC024275-1|AAH24275.1| 465|Homo sapiens Unknown (protein for
IMAGE:4122390) protein.
Length = 465
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>BC016296-1|AAH16296.1| 474|Homo sapiens Unknown (protein for
IMAGE:3538108) protein.
Length = 474
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>BC007757-1|AAH07757.1| 465|Homo sapiens PRPF38B protein protein.
Length = 465
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 190 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 229
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 190 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 229
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 29.9 bits (64), Expect = 8.6
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 4 RQTQEREAANRMRERLRSCSV-RDWRRPNVASRRAHRCPS 120
RQ EREA R +ER RS S+ R R SR HR S
Sbjct: 301 RQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHRSRS 340
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,296,392
Number of Sequences: 237096
Number of extensions: 1814584
Number of successful extensions: 6091
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6079
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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