Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20927
         (676 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051528-1|AAK92952.1|  532|Drosophila melanogaster GH18123p pro...    64   2e-10
AL024456-3|CAA19661.1|  531|Drosophila melanogaster EG:63B12.10 ...    64   2e-10
AF110234-1|AAF14250.1|  498|Drosophila melanogaster coatomer com...    64   2e-10
AE014298-266|AAF45673.1|  532|Drosophila melanogaster CG14813-PA...    64   2e-10
AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-P...    31   1.9  
AE014298-1390|AAF46539.1|  574|Drosophila melanogaster CG15252-P...    29   5.8  

>AY051528-1|AAK92952.1|  532|Drosophila melanogaster GH18123p
           protein.
          Length = 532

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
           THPNVDKE F+S   IGLK   +PFP+++DVGVLKWR   + D+   PL
Sbjct: 349 THPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRF-VSQDESAVPL 396



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 14/91 (15%)
 Frame = +2

Query: 254 NADSFVSRLRSEGDVTAPVASPAQHDAGKPVPAD-------------HKD-VHLRFEERL 391
           + DSFV +L++EG+  A +A PA    G    A              HK+ VHL+ E++L
Sbjct: 244 DVDSFVDQLKNEGEKIANLA-PAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIEDKL 302

Query: 392 NLIAGRDGDIQTFELSGLLTLRISNEQFGRI 484
            +  GRDG +Q FE SGLLTLRI++E +GRI
Sbjct: 303 VVRLGRDGGVQQFENSGLLTLRITDEAYGRI 333



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 51  KELQRERLEAAKRGQP 98
           KELQR+R+EA+KRG P
Sbjct: 164 KELQRQRMEASKRGGP 179


>AL024456-3|CAA19661.1|  531|Drosophila melanogaster EG:63B12.10
           protein.
          Length = 531

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
           THPNVDKE F+S   IGLK   +PFP+++DVGVLKWR   + D+   PL
Sbjct: 348 THPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRF-VSQDESAVPL 395



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 14/91 (15%)
 Frame = +2

Query: 254 NADSFVSRLRSEGDVTAPVASPAQHDAGKPVPAD-------------HKD-VHLRFEERL 391
           + DSFV +L++EG+  A +A PA    G    A              HK+ VHL+ E++L
Sbjct: 243 DVDSFVDQLKNEGEKIANLA-PAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIEDKL 301

Query: 392 NLIAGRDGDIQTFELSGLLTLRISNEQFGRI 484
            +  GRDG +Q FE SGLLTLRI++E +GRI
Sbjct: 302 VVRLGRDGGVQQFENSGLLTLRITDEAYGRI 332



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 51  KELQRERLEAAKRGQP 98
           KELQR+R+EA+KRG P
Sbjct: 164 KELQRQRMEASKRGGP 179


>AF110234-1|AAF14250.1|  498|Drosophila melanogaster coatomer
           complex COPI delta-COPsubunit protein.
          Length = 498

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
           THPNVDKE F+S   IGLK   +PFP+++DVGVLKWR   + D+   PL
Sbjct: 315 THPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRF-VSQDESAVPL 362



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 14/91 (15%)
 Frame = +2

Query: 254 NADSFVSRLRSEGDVTAPVASPAQHDAGKPVPAD-------------HKD-VHLRFEERL 391
           + DSFV +L++EG+  A +A PA    G    A              HK+ VHL+ E++L
Sbjct: 210 DVDSFVDQLKNEGEKIANLA-PAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIEDKL 268

Query: 392 NLIAGRDGDIQTFELSGLLTLRISNEQFGRI 484
            +  GRDG +Q FE SGLLTLRI++E +GRI
Sbjct: 269 VVRLGRDGGVQQFENSGLLTLRITDEAYGRI 299



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 51  KELQRERLEAAKRGQP 98
           KELQR+R+EA+KRG P
Sbjct: 131 KELQRQRMEASKRGGP 146


>AE014298-266|AAF45673.1|  532|Drosophila melanogaster CG14813-PA
           protein.
          Length = 532

 Score = 64.1 bits (149), Expect = 2e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKLAPL 675
           THPNVDKE F+S   IGLK   +PFP+++DVGVLKWR   + D+   PL
Sbjct: 349 THPNVDKELFKSRTTIGLKNLGKPFPLNTDVGVLKWRF-VSQDESAVPL 396



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 14/91 (15%)
 Frame = +2

Query: 254 NADSFVSRLRSEGDVTAPVASPAQHDAGKPVPAD-------------HKD-VHLRFEERL 391
           + DSFV +L++EG+  A +A PA    G    A              HK+ VHL+ E++L
Sbjct: 244 DVDSFVDQLKNEGEKIANLA-PAAPAGGSSAAASASAAAKAAIASDIHKESVHLKIEDKL 302

Query: 392 NLIAGRDGDIQTFELSGLLTLRISNEQFGRI 484
            +  GRDG +Q FE SGLLTLRI++E +GRI
Sbjct: 303 VVRLGRDGGVQQFENSGLLTLRITDEAYGRI 333



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 51  KELQRERLEAAKRGQP 98
           KELQR+R+EA+KRG P
Sbjct: 164 KELQRQRMEASKRGGP 179


>AE014296-1304|AAN12045.1| 9196|Drosophila melanogaster CG32377-PA
            protein.
          Length = 9196

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 166  SDGDDEDIVELPKPLPKDICE 104
            SD + +D +E+PKPL K IC+
Sbjct: 4007 SDDETDDEIEIPKPLDKPICQ 4027


>AE014298-1390|AAF46539.1|  574|Drosophila melanogaster CG15252-PA
           protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 181 FSAIDSDGDDE--DIVELPKPLPKDICERGGWPRLAASN 71
           F  I  DG +E     ELP+P  K   E GGW   AA+N
Sbjct: 471 FRPISEDGSEERHGSAELPRPRKKK--EGGGWAAAAANN 507


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,313,690
Number of Sequences: 53049
Number of extensions: 597971
Number of successful extensions: 2183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2179
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)