BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20927 (676 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 54 1e-07 AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 29 3.0 AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 4.0 AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 4.0 U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enha... 28 5.3 AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal en... 28 5.3 Z75543-6|CAA99873.3| 499|Caenorhabditis elegans Hypothetical pr... 28 7.0 >U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical protein C13B9.3 protein. Length = 515 Score = 53.6 bits (123), Expect = 1e-07 Identities = 18/45 (40%), Positives = 36/45 (80%) Frame = +1 Query: 532 HPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKL 666 HPN+DK+ ++S+ + +K +P+P++SDVG+LKW++A + +++L Sbjct: 335 HPNLDKKEWQSSSTLKIKPNGKPYPVNSDVGILKWKMALSEEEQL 379 Score = 44.0 bits (99), Expect = 1e-04 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%) Frame = +2 Query: 251 HNADSFVSRLRSEGDVTAPVA----SPAQHDAGKPV---PADHKDV-HLRFEERLNLIAG 406 +N D F+ LR +G APV S P+ P ++V H+R EE++N Sbjct: 233 NNEDDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREVVHVRTEEKINTRVS 292 Query: 407 RDGDIQTFELSGLLTLRISNEQFGRIHVXVDN 502 RDG +++ E+ +TL I + +F I + ++N Sbjct: 293 RDGGLESGEVQATVTLSIGSPEFIPISIKMNN 324 >AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog) family protein 6 protein. Length = 1186 Score = 29.1 bits (62), Expect = 3.0 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -1 Query: 178 SAIDSDGDDEDIVELPKPLPKDICERGGWPRLAASNLSRCNSLGVRACGSLPRVL 14 S D + D ++VE P+ P+ +RGG +++ L+ V+ G +V+ Sbjct: 107 SEADENASDCEVVESPESTPQSTPKRGGKKKISKPLLAENTPKSVKMAGKSKKVI 161 >AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical protein Y116A8C.32 protein. Length = 699 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 9 DPRTRGSEPHARTPKELQRERLEAAKRGQPPR 104 D R S +R+P++ RER R PPR Sbjct: 90 DRERRSSRSRSRSPRDRDRERRRRRSRSPPPR 121 >AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein protein. Length = 699 Score = 28.7 bits (61), Expect = 4.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = +3 Query: 9 DPRTRGSEPHARTPKELQRERLEAAKRGQPPR 104 D R S +R+P++ RER R PPR Sbjct: 90 DRERRSSRSRSRSPRDRDRERRRRRSRSPPPR 121 >U50199-1|AAA91262.1| 427|Caenorhabditis elegans Pharyngeal enhancer binding protein1, isoform a protein. Length = 427 Score = 28.3 bits (60), Expect = 5.3 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 527 CNCNGLGLCCRRXRVCDRTARC 462 C C + +CC VC RTA C Sbjct: 406 CGCRVIRICCCDEGVCRRTAAC 427 >AF160187-1|AAD42897.1| 425|Caenorhabditis elegans pharyngeal enhancer binding protein-1 protein. Length = 425 Score = 28.3 bits (60), Expect = 5.3 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 527 CNCNGLGLCCRRXRVCDRTARC 462 C C + +CC VC RTA C Sbjct: 404 CGCRVIRICCCDEGVCRRTAAC 425 >Z75543-6|CAA99873.3| 499|Caenorhabditis elegans Hypothetical protein K01D12.6 protein. Length = 499 Score = 27.9 bits (59), Expect = 7.0 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 619 RRCASGRGVEPASAQSRRSS 560 RR SGRG+ P S+Q RSS Sbjct: 75 RRSQSGRGMRPPSSQGERSS 94 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,066,652 Number of Sequences: 27780 Number of extensions: 273805 Number of successful extensions: 1025 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 964 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1022 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1529108810 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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