Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20927
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical pr...    54   1e-07
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    29   3.0  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    29   4.0  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    29   4.0  
U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal enha...    28   5.3  
AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal en...    28   5.3  
Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U21309-2|AAN73882.1|  515|Caenorhabditis elegans Hypothetical
           protein C13B9.3 protein.
          Length = 515

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 18/45 (40%), Positives = 36/45 (80%)
 Frame = +1

Query: 532 HPNVDKEAFRSTGVIGLKQAQRPFPMHSDVGVLKWRLATTNDDKL 666
           HPN+DK+ ++S+  + +K   +P+P++SDVG+LKW++A + +++L
Sbjct: 335 HPNLDKKEWQSSSTLKIKPNGKPYPVNSDVGILKWKMALSEEEQL 379



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
 Frame = +2

Query: 251 HNADSFVSRLRSEGDVTAPVA----SPAQHDAGKPV---PADHKDV-HLRFEERLNLIAG 406
           +N D F+  LR +G   APV     S        P+   P   ++V H+R EE++N    
Sbjct: 233 NNEDDFLDTLRQQGQSIAPVQKASLSGGVSSLAAPISTAPRVKREVVHVRTEEKINTRVS 292

Query: 407 RDGDIQTFELSGLLTLRISNEQFGRIHVXVDN 502
           RDG +++ E+   +TL I + +F  I + ++N
Sbjct: 293 RDGGLESGEVQATVTLSIGSPEFIPISIKMNN 324


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 178 SAIDSDGDDEDIVELPKPLPKDICERGGWPRLAASNLSRCNSLGVRACGSLPRVL 14
           S  D +  D ++VE P+  P+   +RGG  +++   L+      V+  G   +V+
Sbjct: 107 SEADENASDCEVVESPESTPQSTPKRGGKKKISKPLLAENTPKSVKMAGKSKKVI 161


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 9   DPRTRGSEPHARTPKELQRERLEAAKRGQPPR 104
           D   R S   +R+P++  RER     R  PPR
Sbjct: 90  DRERRSSRSRSRSPRDRDRERRRRRSRSPPPR 121


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 9   DPRTRGSEPHARTPKELQRERLEAAKRGQPPR 104
           D   R S   +R+P++  RER     R  PPR
Sbjct: 90  DRERRSSRSRSRSPRDRDRERRRRRSRSPPPR 121


>U50199-1|AAA91262.1|  427|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform a protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 527 CNCNGLGLCCRRXRVCDRTARC 462
           C C  + +CC    VC RTA C
Sbjct: 406 CGCRVIRICCCDEGVCRRTAAC 427


>AF160187-1|AAD42897.1|  425|Caenorhabditis elegans pharyngeal
           enhancer binding protein-1 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 527 CNCNGLGLCCRRXRVCDRTARC 462
           C C  + +CC    VC RTA C
Sbjct: 404 CGCRVIRICCCDEGVCRRTAAC 425


>Z75543-6|CAA99873.3|  499|Caenorhabditis elegans Hypothetical
           protein K01D12.6 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 619 RRCASGRGVEPASAQSRRSS 560
           RR  SGRG+ P S+Q  RSS
Sbjct: 75  RRSQSGRGMRPPSSQGERSS 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,652
Number of Sequences: 27780
Number of extensions: 273805
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)