Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20927
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...    48   6e-06
At2g40020.1 68415.m04918 expressed protein                             29   2.1  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   2.8  
At2g36560.1 68415.m04484 DNA-binding protein-related contains Pf...    28   5.0  
At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid ...    28   6.6  
At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel...    27   8.7  
At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel...    27   8.7  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    27   8.7  

>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 260 DSFVSRLRSEG-DVTAPVASPAQHDAGKPVPADHKDVHLRFEERLNLIAGRDGDIQTFEL 436
           +  +  L++EG DV   V    Q  A  P P D     L  EE+LN+   RDG + +F++
Sbjct: 251 NQLMESLKAEGEDVIEDVKPTGQSKAAAPPPTD--PFTLTVEEKLNVALRRDGGLSSFDM 308

Query: 437 SGLLTLRISNEQFGRIHVXV 496
            G L+L+I N++ G + V +
Sbjct: 309 QGTLSLQILNQEDGFVQVQI 328



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
 Frame = +1

Query: 529 THPNVDKEAFRSTGVIGLKQAQRPFPM---HSDVGVLKWRLATTNDDKLAPL 675
           THPN++++ F +  ++GLK+  +PFP       VG+L+WR+    D+ + PL
Sbjct: 340 THPNINRDMFNNENILGLKRPDQPFPTGQGGDGVGLLRWRMQRA-DESMVPL 390


>At2g40020.1 68415.m04918 expressed protein
          Length = 228

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = -1

Query: 169 DSDGDDEDIVEL-PKPLPKDICE 104
           DSDGDD++I++L P+PL +++ E
Sbjct: 187 DSDGDDDEIIQLTPEPLCEELQE 209


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 9   DPRT---RGSEPHARTPKELQRERLEAAKRGQPPR 104
           +PRT   RG +PH R P      +++A  R +PP+
Sbjct: 369 NPRTYGSRGLQPHGRWPSNFSDAQMDALSRIRPPK 403


>At2g36560.1 68415.m04484 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 574

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 280 ESGHERVRVVPRLPSFMAERPTVRVSLAGVVGIFSAIDSDGDDEDIVELP 131
           ES +      P  PSF+A   T +V    ++G + +   + +  D++ LP
Sbjct: 398 ESNNAMAVFSPTAPSFLASSSTEQVQQPDMIGPYHSRQRNDESNDVILLP 447


>At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid
           3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) /
           transparent testa 7 protein (TT7) identical to SP|Q9SD85
           Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid
           3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1)
           (TRANSPARENT TESTA 7 protein) {Arabidopsis thaliana};
           similar to gi:10334806, gi:10334808
          Length = 513

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 356 HKDVHLRFEERLNLIAGRDGDIQTFELSGLLTLRISNEQFGRIH 487
           H D+ ++ +E L+++ GRD  +   +++ L  L+   ++  R+H
Sbjct: 321 HPDIMVKAQEELDIVVGRDRPVNESDIAQLPYLQAVIKENFRLH 364


>At5g15410.2 68418.m01803 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 593

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 434 LSGLL--TLRISNEQFGRIHVXVDNKDRDRYSCRPIQTWTKKR 556
           LSGLL  TL I N Q   +H  +  K + +  CR ++ W K+R
Sbjct: 302 LSGLLLFTLLIGNIQVF-LHAVMAKKRKMQIRCRDMEWWMKRR 343


>At5g15410.1 68418.m01804 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC2) identical to
           cyclic nucleotide-gated cation channel GI:3894399 from
           [Arabidopsis thaliana]
          Length = 726

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 434 LSGLL--TLRISNEQFGRIHVXVDNKDRDRYSCRPIQTWTKKR 556
           LSGLL  TL I N Q   +H  +  K + +  CR ++ W K+R
Sbjct: 435 LSGLLLFTLLIGNIQVF-LHAVMAKKRKMQIRCRDMEWWMKRR 476


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 306 GAVTSPSLRSRDTNESALCRGCRASWQNDPLYE 208
           G+V S  + + DT+ S+LC G   S   DP YE
Sbjct: 509 GSVESSGVGTNDTSVSSLCNGI-ISHSEDPEYE 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,940
Number of Sequences: 28952
Number of extensions: 260662
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)