Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20926
(674 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 157 3e-37
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 152 7e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 151 2e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 144 1e-33
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 134 2e-30
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 121 1e-26
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 120 3e-26
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 120 4e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 117 2e-25
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 5e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 104 2e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 92 1e-17
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 81 2e-14
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 79 7e-14
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 75 2e-12
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 75 2e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 74 4e-12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 71 3e-11
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 66 6e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 63 7e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 62 2e-08
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 60 5e-08
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 59 8e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 58 1e-07
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 58 3e-07
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 57 3e-07
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 55 2e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 53 6e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 52 1e-05
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 48 3e-04
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 47 4e-04
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 45 0.001
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 40 0.042
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 35 2.1
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 34 2.7
UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 8.4
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 157 bits (380), Expect = 3e-37
Identities = 71/86 (82%), Positives = 79/86 (91%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9 LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRR 260
L+KVDGKVRTDPTYPAG+MDV+++ +
Sbjct: 69 LVKVDGKVRTDPTYPAGYMDVITLEK 94
Score = 142 bits (343), Expect = 9e-33
Identities = 63/85 (74%), Positives = 72/85 (84%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPL
Sbjct: 94 KTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
I NDS+Q+DIA+ KI D+IKF+SG
Sbjct: 154 IHANDSVQVDIASGKITDYIKFDSG 178
Score = 108 bits (259), Expect = 1e-22
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
NLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG
Sbjct: 179 NLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKG 231
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 152 bits (369), Expect = 7e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
IK+DGKVRTD TYPAGFMDV+SI
Sbjct: 69 FIKIDGKVRTDITYPAGFMDVISI 92
Score = 143 bits (346), Expect = 4e-33
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDPL
Sbjct: 94 KTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
IKVND+IQ+D+ T KI DFIKF++G
Sbjct: 154 IKVNDTIQIDLETGKITDFIKFDTG 178
Score = 97.5 bits (232), Expect = 3e-19
Identities = 38/53 (71%), Positives = 49/53 (92%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
NLCM+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 179 NLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 231
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 151 bits (365), Expect = 2e-35
Identities = 69/84 (82%), Positives = 75/84 (89%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR
Sbjct: 9 LKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
IK+DGKVRTD TYP GFMDV+SI
Sbjct: 69 FIKIDGKVRTDITYPTGFMDVISI 92
Score = 99 bits (238), Expect = 5e-20
Identities = 39/53 (73%), Positives = 50/53 (94%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
N+CM+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG
Sbjct: 211 NMCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKG 263
Score = 93.5 bits (222), Expect(2) = 3e-27
Identities = 40/63 (63%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
Frame = +2
Query: 335 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE-SG 511
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF+ S
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 512 TCV 520
C+
Sbjct: 212 MCM 214
Score = 51.6 bits (118), Expect(2) = 3e-27
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAK 337
KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 94 KTGEHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 144 bits (350), Expect = 1e-33
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
I+VDGKVRTD TYPAGFMDVVSI
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 126 bits (304), Expect = 5e-28
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 87.8 bits (208), Expect = 2e-16
Identities = 38/56 (67%), Positives = 46/56 (82%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
V N+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGT
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 134 bits (324), Expect = 2e-30
Identities = 60/91 (65%), Positives = 69/91 (75%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R
Sbjct: 9 LKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRRLMNCF 275
IK+DGK+RTD YP GFMDV+SI R F
Sbjct: 69 TIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
Score = 104 bits (250), Expect = 2e-21
Identities = 44/85 (51%), Positives = 65/85 (76%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
+T E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P
Sbjct: 94 RTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPE 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
++ ND+I+L++ T KI+DF+KF+ G
Sbjct: 154 LQANDTIKLNLETGKIVDFVKFDIG 178
Score = 87.8 bits (208), Expect = 2e-16
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
+ N M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT
Sbjct: 177 IGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGT 232
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 121 bits (292), Expect = 1e-26
Identities = 56/91 (61%), Positives = 67/91 (73%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+R
Sbjct: 23 LKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRR 82
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRRLMNCF 275
L+KVDGKVRT+ YP G MDV+ + + F
Sbjct: 83 LVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
Score = 99 bits (238), Expect = 5e-20
Identities = 42/85 (49%), Positives = 62/85 (72%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
K+NELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP
Sbjct: 108 KSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPS 167
Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
++V+D+++ +I T ++ IKF+ G
Sbjct: 168 VRVHDALKFNIKTGEVESVIKFKVG 192
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
V ++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 191 VGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 120 bits (289), Expect = 3e-26
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = +2
Query: 287 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 466
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 467 IATTKIMDFIKFESG 511
+ T KI DF KF++G
Sbjct: 136 LETGKITDFFKFDTG 150
Score = 113 bits (272), Expect = 4e-24
Identities = 52/67 (77%), Positives = 57/67 (85%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q
Sbjct: 9 LKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQH 68
Query: 183 LIKVDGK 203
IK+DGK
Sbjct: 69 FIKMDGK 75
Score = 95.5 bits (227), Expect = 1e-18
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
NLCM+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 151 NLCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 203
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 120 bits (288), Expect = 4e-26
Identities = 60/87 (68%), Positives = 68/87 (78%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q
Sbjct: 20 LKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQW 78
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRRL 263
IKVDGK+RTD P MDV+SI ++
Sbjct: 79 FIKVDGKIRTDNNLPYWIMDVISIDKM 105
Score = 103 bits (248), Expect = 3e-21
Identities = 51/109 (46%), Positives = 67/109 (61%)
Frame = +2
Query: 221 LSCWIYGCCLN*KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVT 400
L WI K E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV
Sbjct: 92 LPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVI 151
Query: 401 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGTCV*SREAVTWG 547
HD T+R+PD LIKVND+IQ+D+ T KI +KF++G WG
Sbjct: 152 HDIHTVRHPDSLIKVNDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 64.1 bits (149), Expect = 3e-09
Identities = 27/53 (50%), Positives = 38/53 (71%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
NLC++TGG N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG
Sbjct: 188 NLCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKG 236
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 117 bits (282), Expect = 2e-25
Identities = 55/84 (65%), Positives = 62/84 (73%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q
Sbjct: 6 LKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQG 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
L+ VD R D YPAGFMDVV I
Sbjct: 66 LVHVDNHPRRDGKYPAGFMDVVEI 89
Score = 83.4 bits (197), Expect = 5e-15
Identities = 40/88 (45%), Positives = 52/88 (59%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT + FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPDP
Sbjct: 91 KTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPH 150
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
+ D+I ++ K +D IK G V
Sbjct: 151 TSIGDTIVYNVKEKKCVDLIKNRQGKAV 178
Score = 68.1 bits (159), Expect = 2e-10
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +1
Query: 520 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 179 IVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (271), Expect = 5e-24
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+
Sbjct: 10 KRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNE 69
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIR 257
I VDGKVR D +PAG MDV+SI+
Sbjct: 70 IYVDGKVRADKNFPAGVMDVISIK 93
Score = 111 bits (267), Expect = 1e-23
Identities = 51/88 (57%), Positives = 67/88 (76%), Gaps = 1/88 (1%)
Frame = +2
Query: 260 TNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLI 439
T E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LI
Sbjct: 95 TKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLI 154
Query: 440 KVNDSIQLDIATTKIMDFIKFESGT-CV 520
K NDSI LD+ K++DFIKF G+ CV
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCV 182
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
+ +LC++ G N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGT
Sbjct: 177 IGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGT 232
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 104 bits (250), Expect = 2e-21
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT++ FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P
Sbjct: 206 KTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPE 265
Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
IK+ D+++ D+ KI +F ESG
Sbjct: 266 IKIGDTLKYDLVNNKIENFAHLESG 290
Score = 79.0 bits (186), Expect = 1e-13
Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 60 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 233
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 234 FMDVVSIRRLMNCF 275
MDVV I + F
Sbjct: 198 LMDVVRIEKTDQSF 211
Score = 73.7 bits (173), Expect = 4e-12
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
N+C I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G
Sbjct: 291 NVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQG 343
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 91.9 bits (218), Expect = 1e-17
Identities = 42/86 (48%), Positives = 58/86 (67%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++
Sbjct: 9 LKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEK 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRR 260
IKV+G+VRT+ +P G DVVSI +
Sbjct: 69 NIKVNGRVRTNSHFPVGLFDVVSIEK 94
Score = 66.9 bits (156), Expect = 4e-10
Identities = 31/80 (38%), Positives = 54/80 (67%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP
Sbjct: 94 KTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPA 152
Query: 437 IKVNDSIQLDIATTKIMDFI 496
I + +I++ T+K++++I
Sbjct: 153 IDLGYTIKISNETSKVIEYI 172
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 81.4 bits (192), Expect = 2e-14
Identities = 42/87 (48%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +3
Query: 3 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 179
+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E KI+ +
Sbjct: 12 VKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITR 71
Query: 180 RLIKVDGKVRTDPTYPAGFMDVVSIRR 260
I VDG VR +P +P G MDVV I R
Sbjct: 72 GEIYVDGVVRKEPKFPVGIMDVVEIPR 98
Score = 36.3 bits (80), Expect = 0.68
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPD 430
+T + +R++ + R + I+ EEA+ K+C++K + HDG+ + D
Sbjct: 98 RTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIED 157
Query: 431 P------LIKVNDSIQLDI------ATTKIMDFIKFESGTCV 520
P + V DS+ L++ + K++D I FE G V
Sbjct: 158 PTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWV 199
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 79.4 bits (187), Expect = 7e-14
Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 179
L+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ +
Sbjct: 4 LRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISR 63
Query: 180 RLIKVDGKVRTDPTYPAGFMDVVSI 254
+KVDG VR D +P G MDV+ I
Sbjct: 64 GYVKVDGVVRRDYKFPVGLMDVIEI 88
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 74.9 bits (176), Expect = 2e-12
Identities = 33/84 (39%), Positives = 50/84 (59%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
L+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 4 LRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKG 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+KVDGKVR D YP G MDV+ +
Sbjct: 64 YVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 74.9 bits (176), Expect = 2e-12
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E KI++
Sbjct: 10 LKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
I +DG R + +PAG MDV+SI
Sbjct: 70 KILIDGLKRKEYKHPAGLMDVLSI 93
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 514 LCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
L ITGG+++G IV E DIV +++ G F T VFI+G+
Sbjct: 187 LAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ 237
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T E K++ +
Sbjct: 10 LKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+VDG VR D +P GFMDV+ +
Sbjct: 70 HFRVDGVVRKDYKFPVGFMDVIEV 93
Score = 44.0 bits (99), Expect = 0.003
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +1
Query: 514 LCMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIG 663
+ +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG
Sbjct: 189 IAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIG 239
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 70.5 bits (165), Expect = 3e-11
Identities = 35/84 (41%), Positives = 50/84 (59%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
L+R AP W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R
Sbjct: 12 LRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASR 71
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+I+VDG+V TD +P G MDV+ I
Sbjct: 72 VIEVDGRVVTDYKFPVGLMDVLHI 95
Score = 37.5 bits (83), Expect = 0.29
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +2
Query: 272 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 430
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 431 PL-IKVNDSIQLDIATTKIMDFIKFESGT 514
+ K D++ + I I+ + FE GT
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGT 190
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 66.5 bits (155), Expect = 6e-10
Identities = 32/84 (38%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ KI+ +
Sbjct: 6 LKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEG 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+ VDGKVR D Y G D +SI
Sbjct: 66 KVLVDGKVRKDYRYTVGMFDTISI 89
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 62.9 bits (146), Expect = 7e-09
Identities = 29/84 (34%), Positives = 43/84 (51%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LK APK W + + +PS G H + L L + +R+ LK A E +I+
Sbjct: 10 LKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+ VDG+V D +P GFMD++ I
Sbjct: 70 NVLVDGRVIKDYKFPVGFMDIIEI 93
Score = 49.2 bits (112), Expect = 9e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E++R++ D KGR +++I EE KLCK+ +T + HDG+ + +
Sbjct: 95 KTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDEND 152
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
V D I L + +I + + + G CV
Sbjct: 153 YNVGDVIDLKVPDHEINEVFELKEGACV 180
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 61.7 bits (143), Expect = 2e-08
Identities = 34/84 (40%), Positives = 44/84 (52%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
+ R AP + K + R GPHK++E +PL I L+ LK T E +I+
Sbjct: 4 ITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDG 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+ VDGKVR D YP G MDVV I
Sbjct: 64 KVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 60.1 bits (139), Expect = 5e-08
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E +++ R
Sbjct: 6 MKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATR 65
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
+ VDG++ TD G MDV+++
Sbjct: 66 QVLVDGRIETDLGRGVGLMDVLTV 89
Score = 36.7 bits (81), Expect = 0.51
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 272 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 448
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 449 DSIQLDIATTKIMDFIKFESG 511
D++ + + + F G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 59.3 bits (137), Expect = 8e-08
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR++ PK+W + K + GPH + +PL + LR+ L E +++ +
Sbjct: 6 KRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGN 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSI 254
+ VDG R D +P G MD+++I
Sbjct: 66 VLVDGVARKDLRFPVGLMDIITI 88
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/91 (29%), Positives = 50/91 (54%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
K + A + + + ++ P+ H + +P++I LR+ LK E+ +I+ +
Sbjct: 7 KIMMASRKLKIPRKTNFWSVTPTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNM 66
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIRRLMNCFV 278
+KVDG++ D +P GFMDV+SI L N ++
Sbjct: 67 VKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 35.5 bits (78), Expect = 1.2
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 278 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 454
++YD KG+ I + P KL K VK+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156
Query: 455 IQLDIATTKIMDFIKFESG 511
+ + I +I + +K G
Sbjct: 157 LLMKIPDLEIENVLKIAEG 175
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL+ PK+W + + G + GPH LPL + +R+ LK E +I+ +
Sbjct: 5 KRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGK 64
Query: 186 IKVDGKVRTDPTYPAGFMDVVSI 254
+ VDG R D +P G DV+++
Sbjct: 65 VLVDGISRKDLRFPVGLFDVITL 87
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 57.2 bits (132), Expect = 3e-07
Identities = 28/86 (32%), Positives = 47/86 (54%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV KI+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 186 IKVDGKVRTDPTYPAGFMDVVSIRRL 263
+ ++G + TD D++S ++
Sbjct: 64 VLLNGHIVTDEHIGIDVFDIISFPKI 89
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 54.8 bits (126), Expect = 2e-06
Identities = 31/87 (35%), Positives = 47/87 (54%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRL AP +W + K + + + GPH LP+ ++LR + A +EV KI+ QR
Sbjct: 5 LKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILHQR 63
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRRL 263
+ V+G+ D G D+VSI +L
Sbjct: 64 DVLVNGRACKDSRMGLGVFDIVSIPKL 90
Score = 35.9 bits (79), Expect = 0.90
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSF--DIVHIKDSTGHTFATRLNNVFIIGK 666
N+ MI GG++ G+VG IV R S ++ DS G F T VF++G+
Sbjct: 178 NVAMIVGGKHSGKVGRIVEIIRTASSVPNHVILTDDSAGERFETIEEYVFMVGR 231
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 53.2 bits (122), Expect = 6e-06
Identities = 29/82 (35%), Positives = 41/82 (50%)
Frame = +2
Query: 266 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 445
E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D KV
Sbjct: 91 ESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKV 150
Query: 446 NDSIQLDIATTKIMDFIKFESG 511
D + + KI + IK + G
Sbjct: 151 GDVWAVSVPDMKISEIIKMQPG 172
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL + + + + P P+ G H + + L+ +R+ LK + E +I+ L
Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGL 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSI 254
+KVDGK + + GFMDV+ I
Sbjct: 66 VKVDGKTVREKKFAVGFMDVIEI 88
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 LKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQ 179
L+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV ++
Sbjct: 9 LRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNN 68
Query: 180 RLIKVDGKVRTDPTYPAGFMDVVSI 254
+ VDG+ D +P G DV++I
Sbjct: 69 GKVLVDGRPIKDYKFPVGLFDVLAI 93
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 263 NELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIK 442
N+ +R++ G+ T++ I E K+CKV ++ ++T D R ++ IK
Sbjct: 96 NKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIK 155
Query: 443 VNDSIQLDIATTKIMDFIKFESGT-CV*SR 529
V DS+ + +I+ +KFE G+ C+ +R
Sbjct: 156 VEDSLLIKTINDEIVYALKFEVGSLCLITR 185
Score = 37.9 bits (84), Expect = 0.22
Identities = 21/82 (25%), Positives = 38/82 (46%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KR+++ K G++ + S+GPH + + L+ ++ A E K+VK
Sbjct: 10 KRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGF 69
Query: 186 IKVDGKVRTDPTYPAGFMDVVS 251
+ V+GK +P MD +S
Sbjct: 70 LYVNGKKCLSHKFPISLMDTIS 91
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 47.6 bits (108), Expect = 3e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 6 KRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDN 64
Query: 186 IKVDGKVRTDPTYPAGFMDVVS 251
+ ++GK +D P G D+++
Sbjct: 65 VLINGKAISDEERPVGMFDILA 86
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 47.2 bits (107), Expect = 4e-04
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = +3
Query: 6 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRL 185
K + AP+ + + +A G HK +PL+I LR+ LK E+ +I+ L
Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSL 65
Query: 186 IKVDGKVRTDPTYPAGFMDVVSI 254
+ VDGKV + GFMD +++
Sbjct: 66 VMVDGKVVKERRRGIGFMDTLTV 88
Score = 33.5 bits (73), Expect = 4.8
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = +2
Query: 284 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 463
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 464 DIATTKIMDFIKFESGTCV 520
I +I+D +KF G V
Sbjct: 157 KIPKKEIVDVLKFAPGNRV 175
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 45.2 bits (102), Expect = 0.001
Identities = 26/84 (30%), Positives = 37/84 (44%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR AP W + + G + G H +P + LR+ L T E K +
Sbjct: 10 LKRQMAPSFWGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSG 69
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
++VDG RT + G MDVV +
Sbjct: 70 NVEVDGVKRTSLHHGIGLMDVVEL 93
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 40.3 bits (90), Expect = 0.042
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = -3
Query: 669 ALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTQVPDSNL 496
A D EHV + R + ++ GVL VHN EG + LA D V + DH Q D L
Sbjct: 50 ARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVEL 107
Score = 40.3 bits (90), Expect = 0.042
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = -2
Query: 514 SSRLKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVL 335
S+ ++LD + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 102 SADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVL 161
Query: 334 SLLRGDTVDCESALNIID*TKQFISL 257
D V ES+L ++D + FI+L
Sbjct: 162 RFDSLDAVHNESSLGVVDEPEVFIAL 187
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 34.7 bits (76), Expect = 2.1
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -1
Query: 254 N*DNIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQGQALAQLV 84
N +NI + I + N P E LFH F DFVSG ++ I + + + +AQ +
Sbjct: 56 NDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIAQFI 112
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 34.3 bits (75), Expect = 2.7
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = -2
Query: 670 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWCPHAPSYGL 530
C CR R RRC PWSP CAQ C + RDV +G C P Y L
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARCECRPGYRL 193
>UniRef50_A0YER0 Cluster: Putative uncharacterized protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Putative
uncharacterized protein - marine gamma proteobacterium
HTCC2143
Length = 110
Score = 33.9 bits (74), Expect = 3.6
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +3
Query: 522 DHGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE 674
DH R A HR R RL + H+G+ L+H++EQ +G +
Sbjct: 60 DHQRLFKAALARHRKSRRDQRLHKSLRHKGIAQAELQHKIEQDYQETKGQK 110
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 8.4
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 33 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 194
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 760,614,765
Number of Sequences: 1657284
Number of extensions: 16628723
Number of successful extensions: 52084
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 49202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52042
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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