Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20926
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 142 5e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 142 5e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 142 5e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.81
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 1.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.3
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.3
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.6
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 10.0
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 10.0
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 25 10.0
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 10.0
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 10.0
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (343), Expect = 5e-35
Identities = 64/88 (72%), Positives = 74/88 (84%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPL
Sbjct: 94 KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IKVND+I+L++ T KI FIKF++ V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181
Score = 139 bits (337), Expect = 3e-34
Identities = 61/86 (70%), Positives = 71/86 (82%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRR 260
LIKVDGKVRTD T+P GFMDV+S+ +
Sbjct: 69 LIKVDGKVRTDSTFPTGFMDVISVEK 94
Score = 79.0 bits (186), Expect = 6e-16
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = +1
Query: 520 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 142 bits (343), Expect = 5e-35
Identities = 64/88 (72%), Positives = 74/88 (84%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPL
Sbjct: 94 KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IKVND+I+L++ T KI FIKF++ V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181
Score = 138 bits (333), Expect = 9e-34
Identities = 60/86 (69%), Positives = 71/86 (82%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRR 260
LI+VDGKVRTD T+P GFMDV+S+ +
Sbjct: 69 LIQVDGKVRTDSTFPTGFMDVISVEK 94
Score = 79.0 bits (186), Expect = 6e-16
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = +1
Query: 520 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 142 bits (343), Expect = 5e-35
Identities = 64/88 (72%), Positives = 74/88 (84%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPL
Sbjct: 94 KTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IKVND+I+L++ T KI FIKF++ V
Sbjct: 154 IKVNDTIKLNLETNKIESFIKFDTSAQV 181
Score = 138 bits (335), Expect = 5e-34
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV I+ QR
Sbjct: 9 LKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
LIKVDGKVRTD T+P GFMDV+S+
Sbjct: 69 LIKVDGKVRTDSTFPTGFMDVISV 92
Score = 79.0 bits (186), Expect = 6e-16
Identities = 33/49 (67%), Positives = 42/49 (85%)
Frame = +1
Query: 520 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 666
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGE 230
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 657 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 559
Y V+ P EG LD+H+ A ++L GH+
Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 233 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 78
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 439 QSQRFHPVRHRNYED 483
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 406 WPHHPLPRPTYQSQR 450
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 409 PHHPLPRPTYQSQRFHPVRHRNYEDY 486
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 334 SLLRGDTVDCESALNIID*TKQ 269
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 108 LVIFLRNRLKYALTGNEVLKIV 173
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.0 bits (52), Expect = 10.0
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 102 LPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFM--DVVSIRRLMNCF 275
LPLV ++ + + N L IV Q L+ V Y + ++ I+ L+NCF
Sbjct: 376 LPLVKQYDHKFRNLYSPNIFLSIV-QALVFCGDMVNIQRWYNMSRVNSELSRIKHLLNCF 434
Query: 276 V*SMMLRADSQSTVSPLRRLSTSCVK 353
+ S + D + LR L +K
Sbjct: 435 LNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 25.0 bits (52), Expect = 10.0
Identities = 20/86 (23%), Positives = 33/86 (38%)
Frame = -3
Query: 312 WIVNLPLTS*IRRNSSLVF*LRQHP*IQQDK*GQS*LSHQPL*GVVSQFSGLRFRSKHTS 133
W+V + SL+ P ++ K G + + G + + L ++ HTS
Sbjct: 237 WLVEFSSVCQAAESISLIAVNNNRPPVELPKSGDVLSNREWEAGKIDAMNSLIAQNLHTS 296
Query: 132 DDSSGKSPGASTRATCGDRLTVSVHT 55
SP AST ++ V HT
Sbjct: 297 ASQVSLSPMASTASSSVTNSPVDTHT 322
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 553 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 648
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 412 HHPLPRPTYQSQRFHPVR 465
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,301
Number of Sequences: 5004
Number of extensions: 64943
Number of successful extensions: 196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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