Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20926
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             160   8e-40
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.5  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  160 bits (389), Expect = 8e-40
 Identities = 73/84 (86%), Positives = 78/84 (92%)
 Frame = +3

Query: 3   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
           +KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR
Sbjct: 433 MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492

Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
           LIK+DGKVRTD TYPAGFMDVV+I
Sbjct: 493 LIKIDGKVRTDTTYPAGFMDVVTI 516



 Score =  132 bits (318), Expect = 3e-31
 Identities = 58/85 (68%), Positives = 71/85 (83%)
 Frame = +2

Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
           KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP 
Sbjct: 518 KTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPN 577

Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
           IKVND++ +DI T K++D+IKF++G
Sbjct: 578 IKVNDTVVIDIKTGKVIDYIKFDTG 602



 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 36/53 (67%), Positives = 45/53 (84%)
 Frame = +1

Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
           N+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG
Sbjct: 603 NMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKG 655


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 567 GHDGAHTPQVTASRDHTQVPDSNLMKSIIFVVAMSNWMESL 445
           G +  H    +A   HT VP+SN   S  FV+ ++ ++ SL
Sbjct: 872 GREDYHAEDPSARLRHTPVPESNSAWSTSFVIGVAGFLVSL 912


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +2

Query: 122 EES--SEVCFDRKRSPENCE 175
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -2

Query: 199 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 83
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,251,353
Number of Sequences: 59808
Number of extensions: 550778
Number of successful extensions: 1677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)