Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20926
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   126   2e-29
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.3  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    27   9.2  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    27   9.2  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   9.2  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   9.2  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  126 bits (303), Expect = 2e-29
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = +3

Query: 3   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
           LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR
Sbjct: 8   LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67

Query: 183 LIKVDGKVRTDPTYPAGFMDVVSIRRLMNCF 275
           +++VDGKVRT   +P GFMDVV+I R    F
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98



 Score =  115 bits (276), Expect = 4e-26
 Identities = 52/85 (61%), Positives = 63/85 (74%)
 Frame = +2

Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
           +TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP 
Sbjct: 93  RTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPH 152

Query: 437 IKVNDSIQLDIATTKIMDFIKFESG 511
           +KVND+I  +I+T KI D +KFE G
Sbjct: 153 VKVNDTIVFNISTQKITDSVKFEPG 177



 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 37/53 (69%), Positives = 45/53 (84%)
 Frame = +1

Query: 511 NLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 669
           NL  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG
Sbjct: 178 NLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKG 230


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 296 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 427
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +3

Query: 525 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE 674
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHE 694



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 552 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGH 671
           G H  P        H  H   HG H  H  ++  H+  GH
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGH 717


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 412 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 495
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 453  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 289
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 516 VYDHGRP*LGACGHHRVPRETSRLLRH 596
           V+D GR  +G+    R  RETS+LL+H
Sbjct: 208 VFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 516 VYDHGRP*LGACGHHRVPRETSRLLRH 596
           V+D GR  +G+    R  RETS+LL+H
Sbjct: 157 VFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 245 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 108
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 245 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 108
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,519
Number of Sequences: 27780
Number of extensions: 388748
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)