Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20926
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 144 4e-35
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 144 4e-35
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 144 4e-35
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.70
At1g29760.1 68414.m03639 expressed protein 31 0.70
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.1
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 2.8
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 2.8
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 2.8
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 6.6
At5g52440.1 68418.m06507 HCF106 protein identical to HCF106 [Ara... 27 8.7
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 27 8.7
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 27 8.7
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 27 8.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 144 bits (350), Expect = 4e-35
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
I+VDGKVRTD TYPAGFMDVVSI
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 126 bits (305), Expect = 1e-29
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEANKIVEFIKFDVGNVV 181
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/56 (67%), Positives = 46/56 (82%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
V N+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGT
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 144 bits (350), Expect = 4e-35
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
I+VDGKVRTD TYPAGFMDVVSI
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 126 bits (304), Expect = 1e-29
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/56 (67%), Positives = 46/56 (82%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
V N+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGT
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 144 bits (350), Expect = 4e-35
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +3
Query: 3 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 182
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQR 68
Query: 183 LIKVDGKVRTDPTYPAGFMDVVSI 254
I+VDGKVRTD TYPAGFMDVVSI
Sbjct: 69 HIQVDGKVRTDKTYPAGFMDVVSI 92
Score = 126 bits (304), Expect = 1e-29
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +2
Query: 257 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 436
KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPL
Sbjct: 94 KTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 437 IKVNDSIQLDIATTKIMDFIKFESGTCV 520
IK ND+I+LD+ KI++FIKF+ G V
Sbjct: 154 IKPNDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/56 (67%), Positives = 46/56 (82%)
Frame = +1
Query: 505 VWNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGT 672
V N+ M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGT
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGT 232
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 103 KHSRNLWGPVDGLGAYTPPSLSNIHAL 23
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 214 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 122
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 668 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 573
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 668 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 573
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 193 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 77
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 668 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 573
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 668 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 573
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At5g52440.1 68418.m06507 HCF106 protein identical to HCF106
[Arabidopsis thaliana] GI:4894914; contains Pfam profile
PF02416: mttA/Hcf106 family
Length = 260
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +2
Query: 371 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGTCV*SREAVTWGV 550
GPK + + + G+T+R P I+ + D +T + + T + T V
Sbjct: 106 GPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTPNVYNQNRTNPV 165
Query: 551 W-APSCPARDIPAPSTLCTSRTPRDTPSPRG*TT 649
P P +P+ T+ P D+ SP+ T+
Sbjct: 166 QPPPPPPPPSVPSTEAPVTANDPNDSQSPKAYTS 199
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 126 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 224
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 126 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 224
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 735
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 126 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 224
N ++A+T NE+ +K+RL D ++R D Y
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRY 736
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,606
Number of Sequences: 28952
Number of extensions: 367760
Number of successful extensions: 1095
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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