Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20925
(546 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 31 0.81
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 30 1.4
SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9) 30 1.4
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 2.5
SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) 29 2.5
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 25 3.4
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35) 25 3.6
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22) 28 4.3
SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 28 5.7
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 28 5.7
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 5.7
SB_7889| Best HMM Match : VWC (HMM E-Value=2.6) 28 5.7
>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 32.3 bits (70), Expect = 0.27
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 127 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
T T P+++ A P+ + A PE + A PE++ P+
Sbjct: 26 TAAPMETTAAPDATTAAPDATTAAPEATTAAPEATTAAPE 65
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 127 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 243
T T P+++ A PE + A PE + A PE++ P
Sbjct: 33 TAAPDATTAAPDATTAAPEATTAAPEATTAAPEATTAAP 71
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 127 TCVSQNTGTCPESSCACPEISCACPETSCACPESSCLCP 243
T T PE++ A PE + A PE + A P + P
Sbjct: 40 TAAPDATTAAPEATTAAPEATTAAPEATTAAPVETTAGP 78
>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 274
Score = 30.7 bits (66), Expect = 0.81
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + A PE + PE + CPE + P+
Sbjct: 84 EGNSTSPEGNSASPEGNSTSPEGNSTCPEGNSTSPE 119
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + A PE + A PE + A PE + P+
Sbjct: 133 EGNSTSPEGNSASPEGNSASPEGNSASPEGNSTSPE 168
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + CPE + PE + PE + P+
Sbjct: 98 EGNSTSPEGNSTCPEGNSTSPEGNSTSPEGNSTSPE 133
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ TCPE + PE + PE + PE + P+
Sbjct: 105 EGNSTCPEGNSTSPEGNSTSPEGNSTSPEGNSTSPE 140
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 136 SQNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
++ T PE + A PE + PE + A PE + P+
Sbjct: 69 TEGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 105
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ PE + PE + A PE + PE + CP+
Sbjct: 77 EGNSASPEGNSTSPEGNSASPEGNSTSPEGNSTCPE 112
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + A PE + PE + A PE + P+
Sbjct: 10 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 45
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + PE + A PE + A PE + P+
Sbjct: 126 EGNSTSPEGNSTSPEGNSASPEGNSASPEGNSASPE 161
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + A PE + PE + A PE + P+
Sbjct: 196 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 231
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 139 QNTGTCPESSCACPEISCACPETSCACPESSCLCPQ 246
+ T PE + A PE + PE + A PE + P+
Sbjct: 210 EGNSTSPEGNSASPEGNSTSPEGNSASPEGNSTSPE 245
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 30.7 bits (66), Expect = 0.81
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSCACPESSCLCPQT 249
C++ N C + + C + + C S CP+ S LCP +
Sbjct: 991 CLNDNV-MCLKDNVMCSKDAVTCQNRSVTCPKYSVLCPDS 1029
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSCACPESS 231
C+ N C + + C S CP+ S CP+S+
Sbjct: 998 CLKDNV-MCSKDAVTCQNRSVTCPKYSVLCPDSN 1030
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 136 SQNTGTCPESSCACPEISCACPETSCACPESS 231
S++ TC S CP+ S CP+++ E+S
Sbjct: 1006 SKDAVTCQNRSVTCPKYSVLCPDSNVEPNETS 1037
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Frame = +1
Query: 127 TCVSQNTGTCPES-----SCACPEISCACPETSCACPESSCLCPQT 249
T V N GTC + SC C P SC P C C QT
Sbjct: 40 TTVESNGGTCTYALNETKSCGSDNGGCTGPGASCDEPTGVCSCNQT 85
>SB_22833| Best HMM Match : ATP-synt_8 (HMM E-Value=5.9)
Length = 117
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLCP 243
CP + ACP CP T CP + CP
Sbjct: 4 CPLTLLACPLTLFTCPLTPFTCPLTPFTCP 33
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 151 TCPESSCACPEISCACPETSCACPESSCLCP 243
TCP + CP CP T CP CP
Sbjct: 24 TCPLTPFTCPLPPFTCPLTLLTCPLDMLSCP 54
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLCPQT 249
CP + CP CP T CP CP T
Sbjct: 11 CPLTLFTCPLTPFTCPLTPFTCPLPPFTCPLT 42
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 172 ACPEISCACPETSCACPESSCLCPQT 249
ACP ACP T CP + CP T
Sbjct: 3 ACPLTLLACPLTLFTCPLTPFTCPLT 28
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 151 TCPESSCACPEISCACPETSCACPESSCLCP 243
TCP + CP CP CP + CP
Sbjct: 17 TCPLTPFTCPLTPFTCPLPPFTCPLTLLTCP 47
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 160 ESSCACPEISCACPETSC---ACPESSCLCPQTCS 255
E S +CP+I + SC C E S CPQ CS
Sbjct: 1282 EHSQSCPKICFTSCKPSCPVHCCSEHSNACPQECS 1316
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Frame = +1
Query: 151 TCPESSCA--CPEISCACPETSCACPESSCLCPQTC 252
TC SC CP I C+ +C+ CP C
Sbjct: 1672 TCSPDSCRPECPLICCSVCPPNCSAQSCGNFCPPKC 1707
>SB_22050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSC 213
CVS P + ACP ++ AC SC
Sbjct: 80 CVSYRYDRVPYLTSACPNVTSACQRVSC 107
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.1 bits (62), Expect = 2.5
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 151 TCPESSCACPEISCACPETSCACPESSCLCPQTC 252
+C + C+C + +C C+C + C C C
Sbjct: 145 SCRVACCSCRVVCYSCRVACCSCRVACCSCRVVC 178
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 151 TCPESSCACPEISCACPETSCACPESSCLCPQTC 252
+C + C+C + +C C+C + C C C
Sbjct: 187 SCRVACCSCRVVCYSCRVVFCSCRVACCSCRVVC 220
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = +1
Query: 151 TCPESSCACPEISCACPETSCACPESSCLCPQTC 252
+C + C+C + +C C+C + C C C
Sbjct: 124 SCRIACCSCRVVCYSCRVVFCSCRVACCSCRVVC 157
>SB_20444| Best HMM Match : F-box (HMM E-Value=5.2)
Length = 332
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLCP 243
CP + P C CP P CLCP
Sbjct: 60 CPSAFALLPLPYCLCPNAFALLPLPYCLCP 89
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLCP 243
CP + P C CP P CLCP
Sbjct: 74 CPNAFALLPLPYCLCPSAFALLPLPYCLCP 103
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 24.6 bits (51), Expect(2) = 3.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 139 QNTGTCPESSCACP 180
Q+ G C ES C CP
Sbjct: 1524 QHGGVCTESGCMCP 1537
Score = 22.2 bits (45), Expect(2) = 3.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 217 CPESSCLCPQT 249
C ES C+CP +
Sbjct: 1529 CTESGCMCPSS 1539
>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
Length = 1686
Score = 24.6 bits (51), Expect(2) = 3.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 139 QNTGTCPESSCACP 180
Q+ G C ES C CP
Sbjct: 1266 QHGGVCTESGCMCP 1279
Score = 22.2 bits (45), Expect(2) = 3.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 217 CPESSCLCPQT 249
C ES C+CP +
Sbjct: 1271 CTESGCMCPSS 1281
>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
Length = 1421
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSCAC 219
C +TG P ++C C I P+T+C C
Sbjct: 892 CCLMDTGL-PHTACQCCLIGTGLPQTACQC 920
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 240
C +TG P ++C C I P T+C C P ++C C
Sbjct: 962 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGIPHTACQC 1004
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = +1
Query: 130 CVSQNTGTCPESSCACPEISCACPETSCAC-------PESSCLC 240
C +TG P ++C C I P T+C C P ++C C
Sbjct: 1004 CRLMDTGL-PHTACQCRLIDTGLPHTACQCRLMDTGLPHTACQC 1046
>SB_25690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 4.3
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Frame = +1
Query: 148 GTCPES---SCACPEISCA----CPETSCACPESSCLCPQTC 252
G CP S SCA PE SCA CP C C ++C
Sbjct: 103 GKCPPSPPPSCADPEDSCALDSDCPGDGQKCCAGGAGCGRSC 144
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 160 ESSCACPEISCACPETSCACPESSCLCPQTCS 255
E +CAC CP+ C P C C+
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFCNGESDCT 100
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 160 ESSCACPEISCACPETSCACPESSCLCPQTCS 255
E +CAC CP+ C P C C+
Sbjct: 69 ERNCACRSAEFKCPDGKCVHPSKFCNGESDCT 100
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLCPQ 246
C CA + CA P CA P C P+
Sbjct: 830 CTSVICAISHVICAIPCMMCAIPRVICAIPR 860
>SB_7889| Best HMM Match : VWC (HMM E-Value=2.6)
Length = 203
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 154 CPESSCACPEISCACPETSCACPESSCLC 240
CP+ CPE A PES+C C
Sbjct: 31 CPQMMIKCPENQRVAYHEGPAVPESTCTC 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,168,177
Number of Sequences: 59808
Number of extensions: 75949
Number of successful extensions: 562
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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