Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20924
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 3e-16
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15) 53 2e-07
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 51 1e-06
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 51 1e-06
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 2e-05
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17) 42 6e-04
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 40 0.002
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15) 35 0.068
SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34) 33 0.21
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0) 33 0.21
SB_1408| Best HMM Match : TPR_1 (HMM E-Value=2.6e-05) 33 0.27
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021) 31 1.5
SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06) 29 4.5
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30) 28 7.8
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 83.0 bits (196), Expect = 3e-16
Identities = 41/84 (48%), Positives = 55/84 (65%)
Frame = +1
Query: 511 TFALKLNEKYVKAFLRRSRAAEKSGDLVLALEDVTSACILERFQVQSSLVNADRILKALG 690
T AL+LN KY KA +RR+RA EK L+D+T+ CILE F S +++ADR+LK +G
Sbjct: 204 TKALELNSKYTKALMRRARALEKLERKQECLQDLTAVCILEGFSNPSWMMHADRVLKDIG 263
Query: 691 RQHAREALAKRSPVMPSKHFIKTY 762
RQ A+E R P +PS +IK Y
Sbjct: 264 RQKAKEHFKNRKPTIPSPTYIKAY 287
Score = 74.1 bits (174), Expect = 1e-13
Identities = 36/78 (46%), Positives = 50/78 (64%)
Frame = +2
Query: 278 NEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQN 457
+E TT ++ S + KLKG N+ F +Y++AI Y EAIE CPP+ DL+TFYQN
Sbjct: 128 SEAKTTNMTPSEQAQVAKLKG--NKYFKGCKYEQAIKCYTEAIELCPPENKQDLSTFYQN 185
Query: 458 RSACYEKREMWEQVKEDA 511
R+A YE+ +E V E+A
Sbjct: 186 RAAAYEQMNQFENVVEEA 203
Score = 29.9 bits (64), Expect = 2.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 129 STPFPKWQLAILLGAPIAI 185
S+ KWQ+A+L+GAP+A+
Sbjct: 69 SSGLEKWQIALLIGAPVAV 87
>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
Length = 206
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/78 (39%), Positives = 43/78 (55%)
Frame = +2
Query: 284 ENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRS 463
EN+ + + ++ A K GNR + Y AIALY++AIE P +ATFY NRS
Sbjct: 21 ENSPEEEQDKVKLAEAKKAEGNREYGLKNYVSAIALYSKAIEFAP-----HVATFYGNRS 75
Query: 464 ACYEKREMWEQVKEDALL 517
A Y +++ EDALL
Sbjct: 76 AAYMMISNYDKALEDALL 93
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +2
Query: 317 ERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPP-DRPVDL-----------ATFYQNR 460
E A+ LK AGN+ F G Y +AI +Y A+E CPP RPV + Y NR
Sbjct: 431 EEALNLKDAGNKKFKQGCYVEAIKIYTSALEVCPPMKRPVTRHQATAVWWVLPSVLYSNR 490
Query: 461 SACYEKREMWEQVKED 508
+ CY W+ +D
Sbjct: 491 AQCYINNRDWQSAADD 506
>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 158
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +2
Query: 317 ERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPP-DRPVDL-----------ATFYQNR 460
E A+ LK AGN+ F G Y +AI +Y A+E CPP RPV + Y NR
Sbjct: 72 EEALNLKDAGNKKFKQGCYVEAIKIYTSALEVCPPMKRPVTRHQATAVWWVLPSVLYSNR 131
Query: 461 SACYEKREMWEQVKED 508
+ CY W+ +D
Sbjct: 132 AQCYINNRDWQSAADD 147
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 47.2 bits (107), Expect = 2e-05
Identities = 27/64 (42%), Positives = 33/64 (51%)
Frame = +2
Query: 320 RAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWEQV 499
+A KLK GN A AG+ KAI Y EAI P + FY NRSA + K + +
Sbjct: 8 KAAKLKDQGNAALSAGDTQKAIEFYTEAILLDPANH-----VFYSNRSAAFAKLSKYNEA 62
Query: 500 KEDA 511
EDA
Sbjct: 63 LEDA 66
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 335 KGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWEQVKEDA 511
K GN F G++ A Y EAI+ P D A Y NR+A ++K + E+A
Sbjct: 369 KEKGNEYFKKGDFPSAQKHYTEAIKRNPED-----AKLYSNRAATFQKLAAFNLALEEA 422
>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
Length = 455
Score = 41.9 bits (94), Expect = 6e-04
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Frame = +2
Query: 323 AMKLKGAGNRAFHAGEYDKAIALYNEAIEAC-----PPDRPVDLATFYQNRSACYEKREM 487
A+++K GN+ F AG+Y+ A++ Y A++ ++ + A Y+NR+AC K E
Sbjct: 9 AVEIKEEGNKYFKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQLKLEK 68
Query: 488 WEQVKEDA 511
+E +DA
Sbjct: 69 YEAAIKDA 76
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +2
Query: 335 KGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWEQVKEDAL 514
K GN AF G Y KA LY EA+E P ++ + A Y NR+ K +Q ED
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTN-AKLYYNRAVVGSKLGKNDQAIEDCT 95
Query: 515 LH*NL 529
NL
Sbjct: 96 QAMNL 100
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 508 CTFALKLNEKYVKAFLRRSRAAEKSGDLVLALEDVTSACILER 636
CT A+ L+ Y KA+L+R+ +S A+ D S C +R
Sbjct: 94 CTQAMNLDHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDR 136
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 40.3 bits (90), Expect = 0.002
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +2
Query: 335 KGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWEQVKEDAL 514
K GN AF G Y KA LY EA+E P ++ + A Y NR+ K +Q ED
Sbjct: 37 KQEGNDAFTGGHYQKAYELYTEALEIDPKNKSTN-AKLYYNRAVVGSKLGKNDQAIEDCT 95
Query: 515 LH*NL 529
NL
Sbjct: 96 QAMNL 100
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 508 CTFALKLNEKYVKAFLRRSRAAEKSGDLVLALEDVTSACILER 636
CT A+ L+ Y KA+L+R+ +S A+ D S C +R
Sbjct: 94 CTQAMNLDHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDR 136
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = +2
Query: 320 RAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWE 493
RA+ LK GN AF ++ A+ +YNEA+ P + A Y NR+A + KR WE
Sbjct: 333 RALHLKTIGNEAFCKQQFLTAVNMYNEALNLAP-----NSAVLYANRAAAFIKRS-WE 384
>SB_35701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 39.5 bits (88), Expect = 0.003
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +2
Query: 317 ERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSACYEKREMWEQ 496
+ A LK N F G Y+ AI Y +AIE D+ +Y NRS CY K E +
Sbjct: 185 KEAEDLKLKANGYFKEGNYNSAITFYTQAIEL-----KADVPAYYGNRSFCYLKTEYYGL 239
Query: 497 VKEDA 511
DA
Sbjct: 240 ALADA 244
>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
Length = 458
Score = 35.1 bits (77), Expect = 0.068
Identities = 20/84 (23%), Positives = 43/84 (51%)
Frame = +2
Query: 260 TTISLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDL 439
T+ ++ + + T+ + + ++ ++ GN + G Y AI L+ +AI+ D
Sbjct: 248 TSYNITSGVSGTEQMDPLVLQSRQIAVRGNEMANLGNYQAAIELFTQAIKLDARD----- 302
Query: 440 ATFYQNRSACYEKREMWEQVKEDA 511
F+ NRS C+++ +E+ +DA
Sbjct: 303 FRFFGNRSYCFDRLGQFEKALQDA 326
>SB_26739| Best HMM Match : TPR_2 (HMM E-Value=1e-34)
Length = 935
Score = 33.5 bits (73), Expect = 0.21
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 278 NEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVD 436
N+E T + A +++ G A G Y++++ LY A++ PP+ P D
Sbjct: 145 NKEETIGIPSMA--NFLEMAGMAEMAQQMGNYEQSVELYTSALQCIPPNMPHD 195
>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1981
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +2
Query: 257 KTTISLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVD 436
K S +++ + T+ S + K K AG+ A G++ KA+ LY+EAI+ P +
Sbjct: 3 KNLCSDESKVDLTEQSRPGLHE--KAKWAGD-ACSKGDFQKAVELYSEAIKLDPNNH--- 56
Query: 437 LATFYQNRSACYEKREMWEQVKED 508
Y NRSA + EQ ED
Sbjct: 57 --VLYGNRSAACIRTWQLEQALED 78
>SB_1408| Best HMM Match : TPR_1 (HMM E-Value=2.6e-05)
Length = 190
Score = 33.1 bits (72), Expect = 0.27
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 508 CTFALKLNEKYVKAFLRRSRAAEKSGDLVLALEDVTSACILE--RFQVQSSLVN 663
C AL L+ Y KA+LRR +A L +L D A LE Q Q ++N
Sbjct: 108 CDLALSLDYSYTKAYLRRGKARSHLNKLHESLSDFKEALRLEPGNKQAQQEILN 161
>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1151
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 317 ERAMKLKGAGNRAFHAGEYDKAIALYNEAIE----ACPPDRPVDLATFYQNRSACYEKRE 484
+ A L GN E DKA+ +Y EA+E D ++ T+Y +A YE++
Sbjct: 601 QTARTLNLIGNALMTINEPDKALGMYQEALEMKRRLVGSDDHWEMPTYYNQIAAVYERKA 660
Query: 485 MWEQVK 502
E+ K
Sbjct: 661 TNEEKK 666
>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
Length = 304
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 305 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRS 463
E+ +E A+ K GN + + KAI Y E I+ D V+ A Y NR+
Sbjct: 78 ENPVENALSYKEEGNYEYKRKNFKKAIDAYTEGIKLRCQDGHVN-AILYTNRA 129
>SB_11364| Best HMM Match : TPR_2 (HMM E-Value=3e-06)
Length = 357
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 302 SESAIERAMKLKGAGNRAFHAGEYDKAIALYNEAIEACPPDRPVDLATFYQNRSA 466
S + A L+ GN F + +A+ +Y ++I P L+ Y NRSA
Sbjct: 60 STKSSSTAASLRNEGNTYFQKRQLGRALEVYTQSILVAPSTDLKVLSLAYANRSA 114
>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
Length = 503
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 344 GNRAFHAGEYDKAIALYNEAIEACPPDRPVDL 439
G+ +F AG + AIA Y A CP D + L
Sbjct: 441 GHNSFTAGSFKFAIAEYIRAFRQCPSDPLISL 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,034,219
Number of Sequences: 59808
Number of extensions: 543179
Number of successful extensions: 1226
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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