Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20922
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    27   1.9  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    27   1.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   4.5  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   5.9  

>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 521 VVEQSSLWYV*RVHAVISMLGRSIDGQS 438
           V E+   WYV R HA IS+  +S DG +
Sbjct: 48  VNERCGTWYVNRRHAPISVYFKSTDGHT 75


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 472 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 347
           +A WA  S   L+  L+ A+N +P+   K+ S    +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -2

Query: 399 CSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMTAVLIGQEI 229
           C+  +     G   +S SHIC N  +    ++N+  P +  + VE   TAV+    I
Sbjct: 218 CALQRDIFLHGRMYLSESHICFNSSIFG-WVTNIVIPVTEIVSVEKKSTAVVFPNAI 273


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 455 SIDGQSPHVVKSRIKWQTGAHPQ--KHVCAEVITRCPEVI 342
           SIDG   HVV+    W  G H Q  + V A ++   PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 505 EDCSTTHRPTWDGTRHD*WLHRLKAPTFHWEPQHCGEIKDF 627
           E C+T    T+D  RH   +H    P F  E   CG+ + F
Sbjct: 583 EICNTVFSRTYDLIRHQDTIHAKTRPVFRCE--ICGDQRHF 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,776
Number of Sequences: 5004
Number of extensions: 58659
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)