Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20922
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    30   1.5  
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354...    29   3.5  

>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 444 PIDAPAQHADDSMDPLDVPQGRLLHNAPPDMGRNTS*LMAA--SAQSSDLPLGASTLRRD 617
           P+    +HA+D      + +G+  H  PP+         AA  + QS+D   G S ++RD
Sbjct: 301 PVKKKVEHAEDGQISEIIYKGKHNHQRPPNKRAKDGSSSAADQNEQSNDTVSGLSGIKRD 360

Query: 618 Q 620
           Q
Sbjct: 361 Q 361


>09_06_0187 +
           21433842-21433887,21434504-21435246,21435437-21435484,
           21435929-21436814,21436967-21437056,21437543-21438417
          Length = 895

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 190 FISRMNPYSPELNYFLSYQY 249
           FI R+  +SP++ YF SY+Y
Sbjct: 190 FIGRLPEWSPDVRYFTSYEY 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,683
Number of Sequences: 37544
Number of extensions: 432139
Number of successful extensions: 1048
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)