Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20922
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  29   3.6  
SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               28   8.2  

>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 393 MSTGLPFNATFNYMRRLPIDAPAQHADDSMDPLDVPQGRLLHNAPPD 533
           MSTG P NA+  Y R +   A  Q   + M+       RL H + P+
Sbjct: 456 MSTGFPSNASLQYQRMMHSQASQQALYNRMNAQQNMSQRLSHPSIPE 502


>SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 384 TCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMTA 250
           TCLC     + + H C   H++       P PS  TM + DL+T+
Sbjct: 191 TCLCSHSNTLPKYHNCIGGHIIG-CFDPYPDPSQFTM-IRDLVTS 233


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -2

Query: 558 LVMTCSVPCRAVRCGAVF--LVVRLEGPCCHQHAGQEHRWAVSACS*KSH*MADRCSSTK 385
           +V+ C+V CRAV C  V   +V      CC          AVS C+     +  R  S +
Sbjct: 333 VVLCCAVLCRAVSCRVVLCCVVPCCVVLCCAVSCRAVLCRAVSCCAVLCRAVLCRAVSCR 392

Query: 384 TCLCR 370
             LCR
Sbjct: 393 AVLCR 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,546,400
Number of Sequences: 59808
Number of extensions: 504720
Number of successful extensions: 1241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)