Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20922
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical pr... 31 0.59
Z74030-4|CAA98436.1| 113|Caenorhabditis elegans Hypothetical pr... 31 0.78
L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF040651-4|AAB95014.1| 234|Caenorhabditis elegans Hypothetical ... 29 2.4
L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical ... 29 4.1
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 29 4.1
Z81478-2|CAB03933.1| 195|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL031627-7|CAA20959.2| 200|Caenorhabditis elegans Hypothetical ... 28 7.2
Z81076-9|CAB03057.1| 372|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL023851-2|CAA19555.2| 209|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z70037-4|CAA93877.1| 146|Caenorhabditis elegans Hypothetical
protein T27D12.3 protein.
Length = 146
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 321 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 428
T N ++ WT G+ GTD F+W TG P N +N
Sbjct: 110 TCTALNSFE-WTDGSTTGTDGFIW-KTGDPNNYLYN 143
>Z74030-4|CAA98436.1| 113|Caenorhabditis elegans Hypothetical
protein D1054.7 protein.
Length = 113
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 351 WTSGNNLGTDMFLWMSTGLPFNAT 422
WT G+ GTD F+W TG P NA+
Sbjct: 57 WTDGSTTGTDGFIW-ETGEPNNAS 79
>L17337-5|ABM74562.1| 306|Caenorhabditis elegans Hypothetical
protein ZK686.6 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -2
Query: 399 CSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMTAVLIGQEIVEL 220
CSS +C GYY + + H + S LP M V+DL+ V E +E
Sbjct: 46 CSSACHFVCSGYYTIEQRH-----NASQASPECLPCREGEIMTVDDLVAHV---DEAIED 97
Query: 219 WAIRIHPRDKILNAI 175
IR+ ++ LN +
Sbjct: 98 IRIRLKEEEESLNEL 112
>AF040651-4|AAB95014.1| 234|Caenorhabditis elegans Hypothetical
protein W04H10.4 protein.
Length = 234
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 321 TNAGYNKYDFWTSGNNLGTDMFLWMSTGLPFNATFN 428
T N ++ WT G+ GTD F+W G P N +N
Sbjct: 168 TCTALNSFE-WTDGSTTGTDGFIW-KAGDPNNYQYN 201
>L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical
protein F10E9.2 protein.
Length = 286
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 485 PSRRTTRKTAPQRTARHGTEHVMTNGCIGSKLRPST 592
PS TR+ +PQ+ A H T + NG K+R ST
Sbjct: 92 PSNAFTREVSPQQIAEH-TGELSNNGAERGKIRGST 126
>AL023851-1|CAA19554.1| 149|Caenorhabditis elegans Hypothetical
protein Y68A4B.1 protein.
Length = 149
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 351 WTSGNNLGTDMFLWMSTGLPFNATFNY 431
WT G+ GTD FLW + G P N Y
Sbjct: 87 WTDGSTTGTDGFLWRN-GDPNNGGIYY 112
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +1
Query: 511 CSTTHRPTWDGTRHD*WLHRLKAPTFHWEPQHCGEIKDFICEQTRCYYYNYGS 669
CST+ R + G +H L+A H P H G I + Y YG+
Sbjct: 1213 CSTSKRVAFGGKNGTCVVHELRATKTHSLPSHNGPIAAVAFSEDGKYLATYGA 1265
>Z81478-2|CAB03933.1| 195|Caenorhabditis elegans Hypothetical
protein C31G12.2 protein.
Length = 195
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 351 WTSGNNLGTDMFLWMSTGLPFNA 419
WT G+ GTD ++W S G P NA
Sbjct: 138 WTDGSTTGTDGWIWRS-GEPNNA 159
>AL031627-7|CAA20959.2| 200|Caenorhabditis elegans Hypothetical
protein Y102A5C.16 protein.
Length = 200
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 351 WTSGNNLGTDMFLWMSTGLPFNATFN 428
WT G+ G+D F+W P N + N
Sbjct: 143 WTDGSATGSDAFIWNVATEPNNGSLN 168
>Z81076-9|CAB03057.1| 372|Caenorhabditis elegans Hypothetical
protein F35C5.8 protein.
Length = 372
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 583 TFHWEPQHCGEIKDFICEQTRCYYYNY 663
T W P C FICEQ C NY
Sbjct: 342 TTAWTPVSCANNFRFICEQVACDTDNY 368
>AL023851-2|CAA19555.2| 209|Caenorhabditis elegans Hypothetical
protein Y68A4B.2 protein.
Length = 209
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 351 WTSGNNLGTDMFLW-MSTGLPFNATFN 428
WT G+ GTD F W +S G P N N
Sbjct: 132 WTDGSATGTDGFNWRLSDGEPNNLFLN 158
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,686
Number of Sequences: 27780
Number of extensions: 358291
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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