Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20921
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   111   6e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    32   0.057
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.1  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   3.7  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   6.5  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   6.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.7  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    25   8.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  111 bits (268), Expect = 6e-26
 Identities = 52/94 (55%), Positives = 70/94 (74%)
 Frame = +1

Query: 229 GKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARPGA 408
           GK     ++++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ + + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           IAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147



 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +3

Query: 492 PYQNFKGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
           P +  +GTIEI +DVH++    KVG SEATLLNMLNISP
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISP 180



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +2

Query: 92  KSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMRKASK 262
           K+ YF K+  L ++Y   F+V  DNV                 ++MGKNTM+R+A +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +1

Query: 259 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARPGAIAPLSVVIPA 438
           ++H +N   L KLL    G VG +FT     EV            AR GA+AP + VIPA
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIGYFESFVQNDFARAGAVAPFTHVIPA 139


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +2

Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQSSF 433
           +S T  T+   +   C TS + L + +P  ++  + TNC +T + +     P+     + 
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTI 575

Query: 434 PPTTPAS 454
             +TP +
Sbjct: 576 SSSTPVT 582


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 365 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -1

Query: 461 SGPRPVLWAGMTTDNGAMAPGRAGAWTLCSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 291
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 290 SRAGL 276
           S   L
Sbjct: 195 SEEEL 199


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 284 PSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQSSFPPTTPASV 457
           PSR    +S+    + SP + ++    +  S  S +  +P P  H  S+  P+ P S+
Sbjct: 285 PSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQIPQPTDH--SALSPSKPMSI 340


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 410 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQGYY 517
           L HC  + P    A  Q KPL S+ + SL KF+ ++
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFH 564


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 524 DFNSTLEILVGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGR 396
           D   + E  +G + +W    F S P+P    G+T D+ +  PG+
Sbjct: 670 DVEPSTEQNIGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK 713


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 595 NMLRRVASEAPTLSPG--FKMCTSLMISIVPLKFW*GWKELGRKRFS 461
           N L +V +  P +  G  F+MC S+++S +  +    W  +GR R S
Sbjct: 608 NFLNKVRTYDPDVYFGHDFEMCYSVLLSRLKERKIHNWSSIGRLRRS 654


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 343 DLVEVRDKLLEHKVQAPARP--GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
           +L EV+   +EH+V +        IA L  ++    + + P+K+ + Q L  P+K+S+
Sbjct: 86  ELDEVQRDEIEHEVSSAISSCIHQIAKLQEIVKEQQSQI-PKKSGWLQGLRDPSKLSK 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,059
Number of Sequences: 5004
Number of extensions: 57654
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)