Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20921
(608 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 103 1e-22
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 103 1e-22
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 103 1e-22
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 38 0.008
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 34 0.077
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 32 0.31
11_06_0266 - 21791757-21792982,21793154-21793178 30 1.6
11_01_0355 + 2679561-2680985,2681183-2682295 29 2.2
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 29 2.2
03_04_0243 + 19298293-19299117 29 2.9
12_02_0709 - 22359705-22360292,22360396-22360560,22360650-223611... 29 3.8
06_01_0486 - 3455030-3455770 29 3.8
12_02_0090 + 13493311-13494180 28 5.0
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 5.0
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 28 6.7
02_04_0535 - 23727004-23727082,23727558-23727796,23727915-237283... 28 6.7
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 27 8.8
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 8.8
03_05_0907 + 28678909-28679253 27 8.8
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 103 bits (247), Expect = 1e-22
Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ ++KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVG VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 103 bits (246), Expect = 1e-22
Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ ++KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVG VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 103 bits (246), Expect = 1e-22
Identities = 50/96 (52%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHYDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLEHKVQAPARP 402
GK + IK H DN N +L+P + GNVG +FT+GDL EVR+++ ++KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +2
Query: 71 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGXXXXXXXXXXXXXXXXVLMGKNTMMR 250
+ KA K Y K+ QLLDEY K I ADNVG VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 251 KASK 262
+ K
Sbjct: 64 RCIK 67
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISP 608
KGT+EII V ++K GDKVG+SE+ LL L I P
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRP 185
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 37.5 bits (83), Expect = 0.008
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Frame = +1
Query: 253 SIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLEHKVQAPARPGAIAPLS 423
S+ L N AL+KL LPH ++GN+GF+ + + ++ D +L+H A P + LS
Sbjct: 391 SVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLS 450
Query: 424 V----VIPAHN--TGLGPEKTSFFQALSI 492
I HN G PEK S +L +
Sbjct: 451 ARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 34.3 bits (75), Expect = 0.077
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +1
Query: 280 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLEHKVQAPARPGAIAPLSVVIPA 438
PAL+K L H K VG + T GDL + + L++HKV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 32.3 bits (70), Expect = 0.31
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 233 KNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVPL 412
K+ MM ++W +QP +R L S + LR+V W + +RLQ +P PL
Sbjct: 392 KSCMMAAVQSSSWADLQPELLGLVLTR--LPSLAD-RVRLRAVCRPWRSNARLQPLPPPL 448
Query: 413 P 415
P
Sbjct: 449 P 449
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2
Query: 230 GKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVPVP 409
GK T+ R+A + +W I R L S LRSV W +RL P P
Sbjct: 4 GKGTIGREAQRRSWADIPADIIGVVVGR--LPSVED-RARLRSVCQAWRAAARLHRPPPP 60
Query: 410 LP 415
LP
Sbjct: 61 LP 62
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 269 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWSTKSRLQLVP 403
W ++ HTS TL+ SP+ +S+ T+C++ + + P
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKP 524
>06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = +1
Query: 172 LATDAADPYLATXLQYRAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLV 351
+++D Y + ++ HGK + SIK L NP L + P + N +FTRGD +
Sbjct: 1254 VSSDGRKEYYSKLVKADVHGKDQ-EIYSIK--LPGNPKLGEGKPENQ-NHAIIFTRGDAI 1309
Query: 352 EVRD 363
+ D
Sbjct: 1310 QTID 1313
>03_04_0243 + 19298293-19299117
Length = 274
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 431 MTTDNGAMAPGRAGAWTLCSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 288
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>12_02_0709 -
22359705-22360292,22360396-22360560,22360650-22361157,
22361159-22361577,22362261-22362722,22362853-22364415
Length = 1234
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/75 (29%), Positives = 28/75 (37%)
Frame = -1
Query: 608 WRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKEVFSGPRPVLWAGM 429
WR +QH G S+NL L +Y + F L + K + W
Sbjct: 57 WRLIQHDYGDGDGSANLTPALNVLYSLALFQGVLFFYQWVSYFAGKRLIEKVASKYWQNS 116
Query: 428 TTDNGAMAPGRAGAW 384
GA A RAGAW
Sbjct: 117 KEAGGAGA--RAGAW 129
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 505
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>12_02_0090 + 13493311-13494180
Length = 289
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 314 ATLASCSPAETSLRSVTNCWSTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPS 493
AT ++ PA S + S L ++ VP P SS TT ++ P S+ S
Sbjct: 106 ATTSAPKPATASSPTKVPALSVNPILSIIGVPSPTTTSSLATTTTSTAVLFPRSTLSSAS 165
Query: 494 LPKF 505
P F
Sbjct: 166 TPSF 169
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -3
Query: 408 GTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 280
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 401 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 502
P P PH S PP P S + LSSKL P P+
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPE 83
>02_04_0535 -
23727004-23727082,23727558-23727796,23727915-23728359,
23728528-23728583
Length = 272
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +1
Query: 193 PYLATXLQYRAHGKKHYDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 372
P + + +R + Y I+ D+ + + LLP ++ +G F +++ +K L
Sbjct: 150 PGVVDEIIWRLTNHEEYSGLDIRQTSDSRMSKQHLLPALQTRIGDCFPPPRGLQIHEKNL 209
Query: 373 EH 378
EH
Sbjct: 210 EH 211
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 599 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGMERAWKKE 468
++ VEKGG+ S+ TG + +IV S LEI+ +KE
Sbjct: 612 IEGVEKGGYIVSDNSTGNKPDFIVMSTGSELEIVAKAADELRKE 655
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 92 KSNYFVKIIQLLDEYPKCF 148
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 452 RPVLWAGMTTDNGAMAPGRAGA 387
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,153,576
Number of Sequences: 37544
Number of extensions: 439694
Number of successful extensions: 1407
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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