Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20920
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 105 4e-23
02_05_0737 - 31328473-31330513,31331015-31331184 79 3e-15
08_01_0471 - 4147170-4149207,4150535-4150692 79 5e-15
04_04_1339 + 32760424-32760584,32762428-32764462 76 4e-14
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 69 4e-12
05_01_0355 - 2774217-2774318,2774608-2774775,2774872-2775090,277... 68 1e-11
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 58 1e-08
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 28 10.0
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656... 28 10.0
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 105 bits (252), Expect = 4e-23
Identities = 57/98 (58%), Positives = 71/98 (72%), Gaps = 2/98 (2%)
Frame = +3
Query: 210 DNGFVPFHTRQG--CF*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEG 383
D V F QG F AFYKKDLAKRLL+GKSAS+DAEKSM++KLK ECG FT KLEG
Sbjct: 487 DKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMITKLKTECGSQFTNKLEG 546
Query: 384 MFKDMELSKDINITYKQVNCTDSRYRIIGEFSMSYYIL 497
MFKD+ELSK+IN ++KQ + +R ++ MS ++L
Sbjct: 547 MFKDIELSKEINESFKQ--SSQARTKLPSGIEMSVHVL 582
Score = 103 bits (248), Expect = 1e-22
Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 9/99 (9%)
Frame = +1
Query: 1 LDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQ---------NKPAELIAKFVDLK 153
L+FK LD ++ F +N+ F +++E+FE IN RQ N+PAELIAKF+D K
Sbjct: 410 LEFKASLDRILEESFAKNEAFSNTIKESFEHLINLRQISSSPFFQQNRPAELIAKFLDEK 469
Query: 154 LRAGNKEATEEELERLLDKIMVLFRFIHGKDVFELSIKR 270
LRAGNK +EEELE +LDK++VLFRFI GKDVFE K+
Sbjct: 470 LRAGNKGTSEEELEGILDKVLVLFRFIQGKDVFEAFYKK 508
>02_05_0737 - 31328473-31330513,31331015-31331184
Length = 736
Score = 79.4 bits (187), Expect = 3e-15
Identities = 39/90 (43%), Positives = 59/90 (65%)
Frame = +1
Query: 1 LDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQNKPAELIAKFVDLKLRAGNKEAT 180
L+ K++ D ++N F + F ++ +FE+FIN P E I+ +VD KLR G K AT
Sbjct: 340 LNEKDKHDKIINVAFGNDKTFQNALNSSFEYFINLNNRSP-EFISLYVDDKLRKGLKGAT 398
Query: 181 EEELERLLDKIMVLFRFIHGKDVFELSIKR 270
EE++E +LDK+M+LFR++ KDVFE K+
Sbjct: 399 EEDVEVILDKVMMLFRYLQEKDVFEKYYKQ 428
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/60 (60%), Positives = 44/60 (73%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITY 428
F +YK+ LAKRLL GK+ S DAE+SM+ KLK ECG FT KLEGMF DM+ S+D I +
Sbjct: 422 FEKYYKQHLAKRLLSGKTVSDDAERSMIVKLKTECGYQFTSKLEGMFTDMKTSQDTMIDF 481
>08_01_0471 - 4147170-4149207,4150535-4150692
Length = 731
Score = 78.6 bits (185), Expect = 5e-15
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +1
Query: 1 LDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQNKPAELIAKFVDLKLRAGNKEAT 180
L+ K++ D +V T F + F ++ +FE FIN P E I+ +VD KLR G KEA
Sbjct: 336 LNEKDKYDSIVTTSFSNDKSFQNALNSSFEHFINLNNRCP-EFISLYVDDKLRKGMKEAN 394
Query: 181 EEELERLLDKIMVLFRFIHGKDVFELSIKR 270
EE++E +LDK+M+LFR++ KD+FE K+
Sbjct: 395 EEDVETVLDKVMMLFRYLQEKDLFEKYYKQ 424
Score = 71.7 bits (168), Expect = 6e-13
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKD 413
F +YK+ LAKRLL GK+AS D+E+SML KLK ECG FT KLEGMF D++ S D
Sbjct: 418 FEKYYKQHLAKRLLSGKAASDDSERSMLVKLKTECGYQFTSKLEGMFNDLKTSHD 472
>04_04_1339 + 32760424-32760584,32762428-32764462
Length = 731
Score = 75.8 bits (178), Expect = 4e-14
Identities = 38/90 (42%), Positives = 57/90 (63%)
Frame = +1
Query: 1 LDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQNKPAELIAKFVDLKLRAGNKEAT 180
L+ K++ D +++ F + F ++ +FE FIN P E I+ FVD KLR G K A
Sbjct: 337 LNEKDKYDEIISISFSNDKAFQNALNSSFENFINLNNRSP-EFISLFVDDKLRKGVKGAN 395
Query: 181 EEELERLLDKIMVLFRFIHGKDVFELSIKR 270
EE++E +LDK+M+LFR++ KDVFE K+
Sbjct: 396 EEDVETVLDKVMMLFRYLQEKDVFEKYYKQ 425
Score = 69.7 bits (163), Expect = 3e-12
Identities = 34/55 (61%), Positives = 41/55 (74%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKD 413
F +YK+ LAKRLL GK+ S +AE+SML KLK ECG FT KLEGMF D++ S D
Sbjct: 419 FEKYYKQHLAKRLLSGKTTSDEAERSMLVKLKTECGYQFTSKLEGMFNDLKTSHD 473
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 68.9 bits (161), Expect = 4e-12
Identities = 32/68 (47%), Positives = 48/68 (70%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITY 428
F FY+K LA+RLL KSA+ + E+S+L+KLKQ+CGG FT K+EGM D+ +++D +
Sbjct: 441 FAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQAKF 500
Query: 429 KQVNCTDS 452
++ T S
Sbjct: 501 EEFISTHS 508
Score = 50.8 bits (116), Expect = 1e-06
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Frame = +1
Query: 31 VNTCFQRNDKFIYSMREAFEFFINQ--RQNKPAELIAKFVDLKLRAGNKE-ATEEELERL 201
V CFQ + F +++EAFE F N+ + AEL+A F D L+ G E ++E +E
Sbjct: 365 VTDCFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGGSEKLSDEAIEDT 424
Query: 202 LDKIMVLFRFIHGKDVF 252
L+K++ L +I KD+F
Sbjct: 425 LEKVVRLLAYISDKDLF 441
>05_01_0355 -
2774217-2774318,2774608-2774775,2774872-2775090,
2775176-2775319,2775485-2775767,2775874-2775929,
2776012-2776161,2776254-2776340,2776414-2776449,
2777100-2777162,2777247-2777327,2777407-2777496,
2777690-2777767,2777855-2778058,2778139-2778186,
2778262-2778447,2779879-2779978,2780121-2780260
Length = 744
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITY 428
F FY+K LA+RLL KSA+ + E+S+L+KLKQ+CGG FT K+EGM D+ +++D +
Sbjct: 435 FAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQTKF 494
Query: 429 KQ 434
++
Sbjct: 495 EE 496
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Frame = +1
Query: 31 VNTCFQRNDKFIYSMREAFEFFINQ--RQNKPAELIAKFVDLKLRAG-NKEATEEELERL 201
V CFQ + F +++EAFE F N+ + AEL+A F D L+ G +++ ++E +E
Sbjct: 359 VTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIEDA 418
Query: 202 LDKIMVLFRFIHGKDVF 252
L+K++ L +I KD+F
Sbjct: 419 LEKVVRLLAYISDKDLF 435
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 57.6 bits (133), Expect = 1e-08
Identities = 27/62 (43%), Positives = 43/62 (69%)
Frame = +3
Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITY 428
F F++K L +RLL K+ + + E+ +LSKLKQ GG FT K+EGM KD+ L+K+ ++
Sbjct: 411 FVEFHRKKLGRRLLFDKNTNDEHERILLSKLKQFFGGQFTSKMEGMLKDITLAKEHQSSF 470
Query: 429 KQ 434
++
Sbjct: 471 EE 472
Score = 48.0 bits (109), Expect = 9e-06
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Frame = +1
Query: 31 VNTCFQRNDKFIYSMREAFEFFINQR--QNKPAELIAKFVDLKL-RAGNKEATEEELERL 201
V CFQ N F +++EAFE N+ AEL A + D L R G+++ ++E ++
Sbjct: 335 VTNCFQSNSVFHKALKEAFEVICNKDVVGCSSAELFAAYCDSILKRGGSEKLSDEAIDES 394
Query: 202 LDKIMVLFRFIHGKDVF-ELSIKRI*QR 282
L+K++ L ++ KD+F E K++ +R
Sbjct: 395 LEKVVKLLTYLSDKDLFVEFHRKKLGRR 422
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 288 LVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDME-LSKDINITYKQVNCTDSRYRI 464
LV K A ++ + L+++++ GGG T + D+E +++ + + + N + SR RI
Sbjct: 315 LVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTVNLRCPN-SGSRMRI 373
Query: 465 IGEF 476
G F
Sbjct: 374 AGRF 377
>01_06_0772 -
31864564-31864653,31864733-31864816,31865547-31865603,
31865700-31865828,31866704-31866790,31866856-31866933,
31867150-31867306,31868000-31868141,31868835-31868986,
31869118-31869371,31869819-31869896
Length = 435
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 644 IYSVYSLLFNKKQIVRVLFVYILQFIVFIFF*RKYTYRHYF 522
+Y V S L K Q+ F+YI F+ FI +K TY++ F
Sbjct: 140 LYKVVSGLI-KYQMFICYFLYIAGFVWFILTLKKKTYKYQF 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,968,744
Number of Sequences: 37544
Number of extensions: 411025
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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