Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20920
         (805 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6903| Best HMM Match : Cullin (HMM E-Value=0)                      138   4e-33
SB_16545| Best HMM Match : Cullin (HMM E-Value=0)                      62   5e-10
SB_19637| Best HMM Match : Cullin (HMM E-Value=0)                      40   0.002
SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       28   7.7  

>SB_6903| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 430

 Score =  138 bits (335), Expect = 4e-33
 Identities = 64/90 (71%), Positives = 78/90 (86%)
 Frame = +1

Query: 1   LDFKEQLDHVVNTCFQRNDKFIYSMREAFEFFINQRQNKPAELIAKFVDLKLRAGNKEAT 180
           LDFKEQLD ++   F +++KF+ +M+E+FE FIN+R NKPAELIAKFVD KLRAGNKEAT
Sbjct: 34  LDFKEQLDTMIAEAFMKSEKFVNAMKESFESFINKRPNKPAELIAKFVDSKLRAGNKEAT 93

Query: 181 EEELERLLDKIMVLFRFIHGKDVFELSIKR 270
           EEELERLLD+IMV+FRFIHGKDV+E   K+
Sbjct: 94  EEELERLLDRIMVIFRFIHGKDVYEAFYKK 123



 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/61 (83%), Positives = 56/61 (91%)
 Frame = +3

Query: 255 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQ 434
           AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECG  FT KLEGMFKDMELSKD+ + ++Q
Sbjct: 119 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGAAFTSKLEGMFKDMELSKDVMVQFRQ 178

Query: 435 V 437
           +
Sbjct: 179 M 179


>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 471

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +3

Query: 249 F*AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITY 428
           F  FY K LAKRL+   S S+DAE++M+S+LK  CG  +T +L  MF DM +S D+N ++
Sbjct: 261 FQKFYSKMLAKRLIHNLSISMDAEEAMISRLKHACGYEYTNRLHRMFTDMSISSDLNSSF 320

Query: 429 KQVNCT 446
                T
Sbjct: 321 SDFLAT 326



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 35/55 (63%)
 Frame = +1

Query: 91  FFINQRQNKPAELIAKFVDLKLRAGNKEATEEELERLLDKIMVLFRFIHGKDVFE 255
           F  +Q  +   + +AK+ DL L+  NK  ++ EL+  L +++++F++I  KD+F+
Sbjct: 208 FHADQAFHASLDKLAKYCDLILKKSNKNLSDSELDEKLGEVIIVFKYIDDKDIFQ 262


>SB_19637| Best HMM Match : Cullin (HMM E-Value=0)
          Length = 685

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +3

Query: 342 KQECGGGFTCKLEGMFKDMELSKDINITYKQ 434
           K ECG  FT KLEGMFKDM +S   N  ++Q
Sbjct: 534 KTECGCQFTSKLEGMFKDMTVSHTTNEEFRQ 564



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +1

Query: 178 TEEELERLLDKIMVLFRFIHGK 243
           +E+E+E +LDK MVLFRF+  K
Sbjct: 513 SEQEVEVVLDKCMVLFRFLQEK 534


>SB_31411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 255 AFYKKDLAKRLLVGKSASVDAEKSMLSKLKQECGGGFTCKLEGMFKDMELSKDINITYKQ 434
           A Y   L ++    K  + D  +S L  +       +  KL  MF+D+++S+D+N  +K+
Sbjct: 192 ANYCDMLLRKTTYSKKLTSDEIESKLKDVDVGMPADYINKLARMFQDIKVSEDLNQEFKR 251

Query: 435 VNCTD 449
             C D
Sbjct: 252 -TCRD 255


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
 Frame = +3

Query: 216 GFVPFHTRQGCF*AFYKKDLAKRLLVGKSA-----SVDAEKSMLSKL--KQECGGGFTCK 374
           G  PF         + +++LAK LL GK       S+D  +  +S++  KQE G      
Sbjct: 205 GVTPFDQLPKLKTLYVRQELAKLLLKGKMVLKDHLSIDIIQHCVSRILMKQESGFETQHV 264

Query: 375 LEGMFKDMELSKDINITYKQVNCTDS 452
           +   FK +   +D+++   Q+N   S
Sbjct: 265 MYNAFKGLSALEDLHLENNQINSLTS 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,872,377
Number of Sequences: 59808
Number of extensions: 510113
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)