Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20920
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.82 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.82 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 327  MLSKLKQECGGGFTCKLE 380
            MLS L+ + GG +TC++E
Sbjct: 1370 MLSNLQSQDGGDYTCQVE 1387


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 327  MLSKLKQECGGGFTCKLE 380
            MLS L+ + GG +TC++E
Sbjct: 1366 MLSNLQSQDGGDYTCQVE 1383


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 363 FTCKLEGMFKDMELSKDINITYKQVNCTDSRY 458
           F CK   M    ELSK IN TY      D ++
Sbjct: 457 FCCKGYCMDLLKELSKTINFTYSLALSPDGQF 488


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 675 WLPLCVCVFLLHRLVDGLSHLVLSGYRSP*HLQRKCATHLE 797
           ++PL V + + +++      +VL   R+  HL+  C   +E
Sbjct: 212 YIPLFVMIQVYYKIFCAARRIVLEERRAQSHLEAHCYFDIE 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,339
Number of Sequences: 438
Number of extensions: 5318
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)