Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20919
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 111 1e-25
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 111 1e-25
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 95 1e-20
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 90 3e-19
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 86 4e-18
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 85 7e-18
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 85 1e-17
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 83 3e-17
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 64 1e-11
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 64 2e-11
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 63 4e-11
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 63 4e-11
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 61 2e-10
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 60 4e-10
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 58 9e-10
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 57 2e-09
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 47 2e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 42 8e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 41 1e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 41 1e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 36 0.007
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 32 0.068
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 4.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.9
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 25 7.9
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr... 25 7.9
SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.9
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 7.9
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 111 bits (266), Expect = 1e-25
Identities = 48/82 (58%), Positives = 65/82 (79%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
+L+G++GVGK+CL+ RF + +TIGVDF I+T E++G+ VKLQIWDTAGQERFR
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 435 SITQSYYRSAHALILVYDISCQ 500
+IT SYYR AH +I+VYD++ Q
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQ 93
Score = 48.8 bits (111), Expect = 7e-07
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +2
Query: 524 WLREIEEYANNKVLRILVGNKTDRETERSPS-TLARIFAQRHGMYFLETSAKEAENV 691
WL+EI+ YA V R+LVGNK+D ++ ++A+ FA + FLETSAK++ NV
Sbjct: 102 WLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNV 158
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 111 bits (266), Expect = 1e-25
Identities = 45/80 (56%), Positives = 67/80 (83%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
+L+G++GVGK+CL+ RF++ F P TIG+DF I+T+E+DG+++KLQIWDTAGQERFR
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 72
Query: 435 SITQSYYRSAHALILVYDIS 494
+IT +YYR A ++L+YD++
Sbjct: 73 TITTAYYRGAMGILLLYDVT 92
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/83 (50%), Positives = 62/83 (74%)
Frame = +3
Query: 252 SVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERF 431
+VL+G++GVGK+ L+ RFT+ F +TIGV+F + + +D +K+K QIWDTAGQER+
Sbjct: 13 TVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERY 72
Query: 432 RSITQSYYRSAHALILVYDISCQ 500
R+IT +YYR A ++VYDI+ Q
Sbjct: 73 RAITSAYYRGAVGALIVYDITKQ 95
Score = 52.0 bits (119), Expect = 8e-08
Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Frame = +2
Query: 524 WLREIEEYANNKVLRILVGNKTDRETERSPST-LARIFAQRHGMYFLETSAKEAENV 691
WL+E+ E+A++ ++ +LVGNKTD R+ ST A+ FA + + F+ETSA +A NV
Sbjct: 104 WLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNV 160
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 89.8 bits (213), Expect = 3e-19
Identities = 39/80 (48%), Positives = 57/80 (71%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V++G++GVGKTCL+ +F F ATIG DF+ K V VD + V LQ+WDTAGQERF+
Sbjct: 12 VILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQERFQ 71
Query: 435 SITQSYYRSAHALILVYDIS 494
S+ ++YR A ++VY+++
Sbjct: 72 SLGMAFYRGADCCVIVYNVN 91
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 86.2 bits (204), Expect = 4e-18
Identities = 40/80 (50%), Positives = 53/80 (66%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V +G VGKT L+ RF F ATIG+DF+ KT+ ++ V+LQ+WDTAGQERFR
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74
Query: 435 SITQSYYRSAHALILVYDIS 494
S+ SY R + I+VYDI+
Sbjct: 75 SLIPSYIRDSSVAIIVYDIT 94
Score = 31.9 bits (69), Expect = 0.090
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 524 WLREIEEYANNKVLRILVGNKTDRETERS-PSTLARIFAQRHGMYFLETSAKEAENV 691
W+ ++ + V+ +LVGNKTD +R A+ + +ETSAK NV
Sbjct: 105 WIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHNV 161
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 85.4 bits (202), Expect = 7e-18
Identities = 37/80 (46%), Positives = 55/80 (68%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
+++G +GVGKT ++ ++ F ATIG DF+ K V VD + V LQ+WDTAGQERF+
Sbjct: 12 IILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQ 71
Query: 435 SITQSYYRSAHALILVYDIS 494
S+ ++YR A +LVYD++
Sbjct: 72 SLGVAFYRGADCCVLVYDVN 91
Score = 31.1 bits (67), Expect = 0.16
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 569 ILVGNKTDRETERS--PSTLARIFAQRHG-MYFLETSAKEAENV 691
IL+GNK D E ++ + A F Q G + + ETSAKEA NV
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINV 164
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV----DGEKVKLQIWDTAGQ 422
VL G +G GK+CL++RF + + T+G+DF + + V +++KLQIWDTAGQ
Sbjct: 13 VLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQ 72
Query: 423 ERFRSITQSYYRSAHALILVYDIS 494
E+FRS+ ++YYR A +LVYD++
Sbjct: 73 EKFRSVARNYYRGAAGAVLVYDVT 96
Score = 33.5 bits (73), Expect = 0.030
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 515 LPDWLREIEEYANNKVLRILVGNKTDRETERSPST--LARIFAQRHGMYFLETSAKEAEN 688
L WL +I A + + +L G+K+D + +R ST A +++H ETS+ N
Sbjct: 104 LSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSN 163
Query: 689 V 691
V
Sbjct: 164 V 164
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 83.4 bits (197), Expect = 3e-17
Identities = 39/81 (48%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVD-GEKVKLQIWDTAGQERF 431
VL+G++ VGK+ LV RF + F + +TIG F+ +T+ +D VKL+IWDTAGQER+
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERY 77
Query: 432 RSITQSYYRSAHALILVYDIS 494
+S+ YYR+A+ I+VYDI+
Sbjct: 78 KSLAPMYYRNANCAIVVYDIT 98
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 524 WLREIEEYANNKVLRILVGNKTDRETERS--PSTLARIFAQRHGMYFLETSAKEAENV 691
W++E++ A ++ L GNK D ER A +A + F ETSAK AENV
Sbjct: 109 WIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENV 166
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 64.5 bits (150), Expect = 1e-11
Identities = 29/85 (34%), Positives = 50/85 (58%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V+VG+ GKTCL+ F++G FP T+ ++ + VEVDG ++L +WDTAGQE +
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQEDYD 68
Query: 435 SITQSYYRSAHALILVYDISCQPTL 509
+ Y +H +++ + + +L
Sbjct: 69 RLRPLSYPDSHVVLICFSVDAPESL 93
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V+VG+ GKTCL+ F++G FP T+ ++ + VEVDG V+L +WDTAGQE +
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQEDYD 68
Query: 435 SITQSYYRSAHALILVYDISCQPTL 509
+ Y +H +++ + + +L
Sbjct: 69 RLRPLSYPDSHVILICFAVDSPDSL 93
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/84 (32%), Positives = 48/84 (57%)
Frame = +3
Query: 258 LVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFRS 437
++G++ +GKT L+ + QG F T+GV+FM KT+ + ++ IWD GQ F +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 438 ITQSYYRSAHALILVYDISCQPTL 509
+ A A++ ++D+S + TL
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTL 98
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 62.9 bits (146), Expect = 4e-11
Identities = 32/103 (31%), Positives = 55/103 (53%)
Frame = +3
Query: 201 LSMIFGDRDGRLQVSI*SVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVD 380
+S FG + + I V++G+ GKT L+ FT+G FP TI ++ I + VD
Sbjct: 1 MSSCFGSKKKPIYRKI--VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVD 57
Query: 381 GEKVKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTL 509
G ++L +WDTAGQE + + Y H +++ + + + +L
Sbjct: 58 GNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSL 100
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 60.9 bits (141), Expect = 2e-10
Identities = 30/85 (35%), Positives = 47/85 (55%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V+VG+ GKT L+ FT G FP T+ ++ + VDG+ V+L +WDTAGQE +
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEEYE 70
Query: 435 SITQSYYRSAHALILVYDISCQPTL 509
+ Y AH +++ + I +L
Sbjct: 71 RLRPMSYAKAHIILVGFAIDSPDSL 95
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIK-TVEVDGEKVKLQIWDTAGQERF 431
V+VG+ G GKTCL+ F+ G FP T+ +++ T + + ++L +WDTAGQE +
Sbjct: 18 VVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEY 77
Query: 432 RSITQSYYRSAHALILVYDISCQPTL 509
+ Y +++ ++L + I C +L
Sbjct: 78 DRLRPLSYPNSNVILLCFSIDCPASL 103
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.4 bits (135), Expect = 9e-10
Identities = 31/80 (38%), Positives = 45/80 (56%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V+VG+ GVGK+ L + Q F TI D K E+DGE L + DTAGQE +
Sbjct: 12 VVVGDGGVGKSALTIQLIQSHFVDEYDPTIE-DSYRKKCEIDGEGALLDVLDTAGQEEYS 70
Query: 435 SITQSYYRSAHALILVYDIS 494
++ + Y R+ +LVY+I+
Sbjct: 71 AMREQYMRTGEGFLLVYNIT 90
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 57.2 bits (132), Expect = 2e-09
Identities = 28/84 (33%), Positives = 44/84 (52%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
VLVG+ G GKT V+R G F AT+GV+ + ++ +WDTAGQE+
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLG 72
Query: 435 SITQSYYRSAHALILVYDISCQPT 506
+ YY I+++D++ + T
Sbjct: 73 GLRDGYYIQGQCGIIMFDVTSRIT 96
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFR 434
V+VG+ VGKTCL+ +T FP T+ ++ + TV + E L ++DTAGQE +
Sbjct: 7 VVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQEDYD 65
Query: 435 SITQSYYRSAHALILVYDIS 494
+ Y ++ + ++
Sbjct: 66 RLRPLSYPQTDVFLVCFSVT 85
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/79 (27%), Positives = 40/79 (50%)
Frame = +3
Query: 258 LVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFRS 437
++G+ VGK+ L ++ + F TI F K ++ G++ +I DTAGQ+ +
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDEYSI 69
Query: 438 ITQSYYRSAHALILVYDIS 494
+ + H +LVY I+
Sbjct: 70 LNSKHSIGIHGYVLVYSIT 88
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 354 FMIKTVEVDGEKVKLQIWDTAGQERFRSITQSYYRSAHALILVYD 488
F I+T+EV+G ++ IWD GQ+ R+ ++Y+ S A+I V D
Sbjct: 50 FQIRTLEVEG--LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVD 92
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 41.1 bits (92), Expect = 1e-04
Identities = 27/98 (27%), Positives = 49/98 (50%)
Frame = +3
Query: 195 LCLSMIFGDRDGRLQVSI*SVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE 374
L +S +F G+ ++ I ++VG GKT ++ + G TIG F ++TVE
Sbjct: 3 LSISKLFQSLFGKREMRI--LMVGLDAAGKTTILYKLKLGEIVTTI-PTIG--FNVETVE 57
Query: 375 VDGEKVKLQIWDTAGQERFRSITQSYYRSAHALILVYD 488
+ +WD GQ++ R + + Y+++ +I V D
Sbjct: 58 Y--RNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVD 93
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 348 VDFMIKTVEVDGEKVKLQIWDTAGQERFRSITQSYYRSAHALILVYD 488
V F ++TV + +K +WD GQ++ R + + Y+ LI V D
Sbjct: 53 VGFNVETVTY--KNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 32.3 bits (70), Expect = 0.068
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 258 LVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFRS 437
++GN G G+T +R QG F P + F+ + + ++L + ++GQ+R
Sbjct: 35 IIGNTGSGRTTFLRCI-QGSFTPSPSTSFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAY 93
Query: 438 ITQSYY 455
++ Y+
Sbjct: 94 YSERYH 99
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Frame = +3
Query: 255 VLVGNAGVGKTCLVRRFTQGLFPPGQGATIG--VDFMIKTVEVDGEKVKLQIWDTAGQER 428
+L+G +G GK+ + R + +G +D V G V L +WD GQE
Sbjct: 6 LLMGRSGSGKSSM-RSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQEA 63
Query: 429 FRSITQS-----YYRSAHALILVYDI 491
F S +R+ LI V+D+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDV 89
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 353 IHSYGSTLTRRK*TLCEPTHQTSLPNTCVPDEHTL 249
IH Y S L+ L TH+ +P V DE L
Sbjct: 503 IHKYSSVLSAYGLALAHVTHEEQMPCLSVLDEDNL 537
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 629 SSPMCLGISLSLCLFYYQLI 570
+ PM LG++L+ +FYY+++
Sbjct: 167 TDPMRLGLALNFSVFYYEIL 186
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 4/20 (20%)
Frame = -2
Query: 337 AP*PGG----NKPCVNRRTK 290
AP PGG NKPC N+ TK
Sbjct: 365 APKPGGLRRANKPCFNKETK 384
>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 458
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 275 CWEDLFGASVHTGFISAGSRCY 340
C DLF S+ TG + A +CY
Sbjct: 331 CLLDLFVPSIRTGALKAMKKCY 352
>SPBC947.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 65 KMICLEKKNLIILSKTTEWN 6
K +C +++ ILS TTE+N
Sbjct: 73 KFLCTDREGAAILSNTTEYN 92
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 459 SAHALILVYDISCQPTLIVY-LTG*GR 536
S A ++V+D+S QP+ ++Y LTG R
Sbjct: 151 STDASLIVWDVSSQPSRLLYKLTGHSR 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,723
Number of Sequences: 5004
Number of extensions: 60091
Number of successful extensions: 198
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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