Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20917
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 42 7e-05
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 34 0.019
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 33 0.045
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 32 0.10
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 30 0.32
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 30 0.42
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 30 0.42
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.97
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa... 28 1.7
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 28 1.7
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 28 1.7
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 28 1.7
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 27 2.2
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 27 2.2
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 9.0
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 42.3 bits (95), Expect = 7e-05
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
L+R+L + +G +G+G+FV +AL G ++ LI + V G L + AE
Sbjct: 58 LQRKLKPRHMQMIAIGGCVGTGLFVGSGNALADGGPASI-LIAFAVIGTYVLFTTSALAE 116
Query: 440 LGTVVGKSGAEYAYFQEAFGKIHNF--GVHYRLS 535
L + SG+ Y YF + F G+ Y LS
Sbjct: 117 LSAIYPVSGSFYTYFSKFIDPAWGFAVGIQYWLS 150
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 34.3 bits (75), Expect = 0.019
Identities = 23/76 (30%), Positives = 35/76 (46%)
Frame = +2
Query: 254 IKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSF 433
+ LKR L + +G IG+G+FV S+L G A +I +T+ GI+ +
Sbjct: 78 VALKRHLKGRHMQMIAIGGAIGTGLFVGSGSSLA-DGGPASVIIDYTLIGIMMFFTVYAL 136
Query: 434 AELGTVVGKSGAEYAY 481
EL +G Y Y
Sbjct: 137 GELAVSYPVAGGFYNY 152
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 33.1 bits (72), Expect = 0.045
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +2
Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
KLKR L + +G IG+G++V + L G A LI +++ G + L+ S
Sbjct: 78 KLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLR-EGGAASVLICYSLVGSMVLMTVYSLG 136
Query: 437 ELGTVVGKSGAEYAY 481
EL +G+ + Y
Sbjct: 137 ELAVAFPINGSFHTY 151
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 296 LILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGII-SLLGALSFAELGTVVGKSGAE 472
+ +G IG+G+FV SAL SG +L L +S +I +++ AL E+ T + SGA
Sbjct: 50 IAIGGCIGTGLFVGSGSALSESGPASLFLSYVIMSFVIWTVMNAL--GEMCTYLPLSGAS 107
Query: 473 YAYFQEAF 496
+ E +
Sbjct: 108 PITYIERY 115
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 30.3 bits (65), Expect = 0.32
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +2
Query: 254 IKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSF 433
+ LKR+L + +G IGSG++V SA G A +I + + GI+ + +
Sbjct: 71 VALKRKLTSRHMQMISVGGAIGSGLYVGSGSAFA-DGGPASVIINYILIGIMMIFVIYAL 129
Query: 434 AELGTVVGKSGAEYAYFQEAFGKIHNFGVHY 526
EL +G+ Y F V +
Sbjct: 130 GELAIAYPVAGSFNTYATRFIDPAWGFAVSW 160
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.9 bits (64), Expect = 0.42
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
LKR L + +G IGSG++V SAL G A +I + + GI+ + E
Sbjct: 73 LKRGLSTRHMQLMSIGGAIGSGLYVGSGSALA-DGGPASVIINYILIGIMMFFVIYALGE 131
Query: 440 LGTVVGKSGAEYAYFQEAFGKIHNFGVHY 526
+ +G+ Y F V +
Sbjct: 132 MAVAYPVAGSFNTYATRFIDPAWGFAVSW 160
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 29.9 bits (64), Expect = 0.42
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 118 RCIDFFYLILYLGNGILTVSRCPLKKRKYLIDLKL*ADSTANAAAHKIKTRTRLVL 285
R +D +L+ Y + ++ V + P+K +D+K+ ++ H + + +RL L
Sbjct: 138 RALDCDFLVHYGHSCLIPVDQTPIKVLYVFVDIKIDLQHVVSSLKHNLPSNSRLAL 193
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 28.7 bits (61), Expect = 0.97
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -2
Query: 462 DFPTTVPNSANDNAPSKDIIPETVHIIRHSATDPEYSNAEAGETNIPDPIITPRIRLTAE 283
D T +P+ A DN SK + +H I +AT S+ +A + I +PII+P + + +
Sbjct: 531 DSKTDIPSEAPDN--SKLVEDTNLHTI--NATVNIESDLDAAKPGIENPIISPLLPVKDD 586
Query: 282 NK 277
K
Sbjct: 587 EK 588
>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/89 (23%), Positives = 36/89 (40%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
LKR L + +G IG+G++V S+L G A +I +++ GI+ + E
Sbjct: 73 LKRSLKSRHMQMISIGGAIGTGLYVGSGSSLA-DGGPASVIINYSLIGIMMFFIVYALGE 131
Query: 440 LGTVVGKSGAEYAYFQEAFGKIHNFGVHY 526
+ +G Y F V +
Sbjct: 132 MAVAYPVAGGFNTYATRFIDPAWGFAVSW 160
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.7
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +2
Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYS----GSVALCLIIWTVSGIISLLGA 424
+ +R L LFS ++ ++ G+ S A+ L YS G+ L L W ++ + + A
Sbjct: 55 EFQRGLSLFSVFSVSFSLL---GLLPSVATTLPYSIGYTGTPGL-LWGWLIAMVFIICIA 110
Query: 425 LSFAELGTVVGKSGAEY 475
LS AEL + + SG Y
Sbjct: 111 LSMAELCSAMPTSGGLY 127
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +2
Query: 263 KRELGLFSAVNLILGVMIGSGIFVSPASALEY---SGSVALCLIIWTVSGIISLLGALSF 433
KRE ++ + + SG+F + + Y SG + W ++G + ALS
Sbjct: 58 KREFSTWATFSFAFSI---SGLFATVVTTYSYPLISGGAPSAVWCWLIAGAGCMCIALSV 114
Query: 434 AELGTVVGKSGAEY 475
AEL + SG Y
Sbjct: 115 AELVSAYPTSGGLY 128
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
+KR L + L +IG G+F+ SAL G V L ++ + + I+ LS E
Sbjct: 40 IKRGLKTRHVSMMALAGIIGPGVFIGMGSALHIGGPVGL-IVGFAIVSIVVFGVMLSIGE 98
Query: 440 LGTV 451
++
Sbjct: 99 FNSL 102
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 31/70 (44%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
LKR L + +G IG+G++V + +L Y G A LI + + G + + E
Sbjct: 79 LKRRLKSRHIQMIGIGGAIGTGVWVGSSKSL-YRGGAASVLIDYCIVGTMVFCTVYALGE 137
Query: 440 LGTVVGKSGA 469
L G+
Sbjct: 138 LAVAFPTRGS 147
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 296 LILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAEL 442
+ +G IG+G+FVS +L+ +G +L + +S +I L LS E+
Sbjct: 77 IAIGSCIGTGLFVSTGKSLKNAGPGSLMINFIILSAMILAL-ILSLGEM 124
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 474 YSAPDFPTT-VPNSANDNAPSKDIIPETVHIIRHSA 370
++ +F TT VP+ N+ K ++ + HII SA
Sbjct: 631 HNGSEFGTTGVPDEPNEEELPKHVLKQVEHIINESA 666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,695
Number of Sequences: 5004
Number of extensions: 69346
Number of successful extensions: 203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -