Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20917
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0676 - 27187778-27188316,27188441-27188530,27189249-271894... 51 9e-07
11_01_0345 + 2579602-2579836,2581262-2581484,2582822-2583173,258... 44 1e-04
12_01_0368 + 2815424-2815658,2816898-2817120,2818329-2818680,281... 44 2e-04
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076... 43 2e-04
06_03_0363 + 19904002-19905792 43 3e-04
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 40 0.002
03_05_0456 - 24498212-24499581,24502660-24503071 40 0.002
03_05_0530 - 25306788-25306919,25307446-25308037,25308152-253089... 39 0.005
12_02_1169 - 26655170-26655332,26655429-26655504,26655603-266557... 37 0.015
01_01_0771 - 5982826-5983327,5983424-5984772 36 0.036
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 33 0.25
01_07_0156 - 41544396-41544755,41544854-41544983,41545085-415453... 30 2.3
12_01_0301 - 2280215-2281154,2281271-2281338 29 4.1
02_01_0783 + 5835517-5835861,5835989-5836060,5836140-5836220,583... 29 4.1
04_03_0229 - 13006869-13007017,13007925-13008089,13008178-130083... 28 7.1
01_07_0160 - 41563109-41563468,41563566-41563985,41564082-415642... 28 7.1
01_07_0158 - 41556455-41557300,41557402-41557583,41557705-415578... 28 7.1
01_05_0488 - 22647196-22647561,22647847-22647999,22648716-226496... 28 7.1
06_01_1155 + 9777611-9777808,9777899-9780132,9780218-9780469,978... 28 9.4
>04_04_0676 -
27187778-27188316,27188441-27188530,27189249-27189480,
27189569-27189899,27190369-27190591,27190772-27191132
Length = 591
Score = 51.2 bits (117), Expect = 9e-07
Identities = 29/113 (25%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +2
Query: 221 SKQTAQ-RMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTV 397
+++T++ R R ++KR L + V L +G M+G+G+FV+ + A+ + +
Sbjct: 29 AQETSEVRDRSGARMKRRLEWYDLVGLGVGGMLGAGVFVTTGRVARDTAGPAV-FASYVI 87
Query: 398 SGIISLLGALSFAELGTVVGKSGAEYAYFQEAFGKIHNF--GVHYRLSHVLGS 550
+G+ +LL + +AE V +G ++Y + FG++ F G + + +VL +
Sbjct: 88 AGVSALLSSFCYAEFSVRVPAAGGAFSYLRVTFGELVGFFGGANILMEYVLSN 140
>11_01_0345 +
2579602-2579836,2581262-2581484,2582822-2583173,
2583894-2584125,2584683-2585266
Length = 541
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALE-YSGSVALCLIIWTVSGIISLLGALSFA 436
+ R L V L LG M+G+G+FV+ A Y+G ++ + ++G+ +LL A +
Sbjct: 1 MARRLRWHDLVGLGLGGMVGAGVFVTTGRATRLYAGPGV--VVSYAIAGLCALLSAFCYT 58
Query: 437 ELGTVVGKSGAEYAYFQEAFGKIHNF 514
E + +G ++Y + FG++ F
Sbjct: 59 EFAVDMPVAGGAFSYLRVTFGELAAF 84
>12_01_0368 +
2815424-2815658,2816898-2817120,2818329-2818680,
2819354-2819620
Length = 358
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +2
Query: 290 VNLILGVMIGSGIFVSPASALE-YSGSVALCLIIWTVSGIISLLGALSFAELGTVVGKSG 466
V L LG M+G+G+FV+ A Y+G ++ + ++G+ +LL A + E + +G
Sbjct: 11 VGLGLGGMVGAGVFVTTGRATRLYAGPAV--VVSYAIAGLCALLSAFCYTEFAVDMPVAG 68
Query: 467 AEYAYFQEAFGKIHNF 514
++Y + FG++ F
Sbjct: 69 GAFSYLRVTFGELAAF 84
>02_05_0177 +
26505956-26506202,26506838-26507247,26507448-26507624,
26507775-26507999,26508089-26508265,26508357-26508593,
26508855-26508944,26509102-26509254
Length = 571
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
L R+LG+F V L +G IG+GIFV + +G I + ++G +L AL +AE
Sbjct: 47 LVRQLGVFELVLLGIGASIGAGIFVVTGTVARDAGPGV--TISFVLAGAACVLNALCYAE 104
Query: 440 LGT-VVGKSGAEYAYFQEAFGKIHNFGVHYRL 532
L + G Y Y AF ++ F V +L
Sbjct: 105 LASRFPAVVGGAYLYTYAAFNELTAFLVFTQL 136
>06_03_0363 + 19904002-19905792
Length = 596
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = +2
Query: 260 LKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAE 439
L+R L L G ++GSG+FV + A+ L + +G +LL + +AE
Sbjct: 72 LRRCLSWLDLAFLGFGSVVGSGVFVLTGQEARFDAGPAIPL-AYAAAGFSALLSSFCYAE 130
Query: 440 LGTVVGKSGAEYAYFQEAFGKIHNF 514
L T + +G ++Y + G I F
Sbjct: 131 LATEIPSAGGSFSYLRVELGDIAAF 155
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +2
Query: 239 RMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLL 418
R R ++KR L + +G +IG+GIFV + A+ L + VSG+ ++L
Sbjct: 67 RGRSGAEMKRNLTWWDLAWFGVGAVIGAGIFVLTGQEARDAAGPAVVLS-YAVSGVSAML 125
Query: 419 GALSFAELGTVVGKSGAEYAYFQEAFG 499
L + E + +G +AY + G
Sbjct: 126 SVLCYTEFAIEIPVAGGSFAYLRVELG 152
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 40.3 bits (90), Expect = 0.002
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 239 RMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLL 418
R R +KR+L + +G +IG+GIFV + A+ +I + VSG+ ++L
Sbjct: 64 RARSGADMKRDLTWWDLAWFGVGAVIGAGIFVLTGQEARNAVGPAV-VISYVVSGVSAML 122
Query: 419 GALSFAELGTVVGKSGAEYAYFQEAFGKIHNF 514
+ E + +G +AY + G F
Sbjct: 123 SVFCYTEFAVEIPVAGGSFAYLRVELGDFMAF 154
>03_05_0530 -
25306788-25306919,25307446-25308037,25308152-25308975,
25309533-25309592,25310115-25310180,25310318-25310461,
25310616-25310756,25310898-25311056,25311818-25311884,
25311986-25312158,25312237-25312333,25312410-25312528,
25312867-25312951,25313120-25313321,25314456-25314633
Length = 1012
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +2
Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
+L +EL + + V + +G IG+G++V + AL I + ++GI S L A +A
Sbjct: 46 QLAKELNIPALVAIGVGSTIGAGVYVLVGTVAREHAGPALT-ISFLIAGIASALSAFCYA 104
Query: 437 ELGTVVGKSGAEYAY 481
EL + +G+ Y Y
Sbjct: 105 ELASRCPSAGSAYHY 119
>12_02_1169 -
26655170-26655332,26655429-26655504,26655603-26655715,
26655808-26655913,26656001-26656235,26656415-26656573,
26657279-26657377,26657472-26657568,26657650-26657768,
26657860-26658000,26658100-26658184,26658287-26658488,
26659274-26659379
Length = 566
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/75 (28%), Positives = 39/75 (52%)
Frame = +2
Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
+L +EL + V + +G IG+G++V + AL L + ++G+ + L A +A
Sbjct: 22 QLAKELSVTQLVAIGVGSTIGAGVYVLVGTVAREHAGPALTLS-FLIAGVAAALSAFCYA 80
Query: 437 ELGTVVGKSGAEYAY 481
EL + +G+ Y Y
Sbjct: 81 ELASRCPSAGSAYHY 95
>01_01_0771 - 5982826-5983327,5983424-5984772
Length = 616
Score = 35.9 bits (79), Expect = 0.036
Identities = 23/94 (24%), Positives = 40/94 (42%)
Frame = +2
Query: 233 AQRMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIIS 412
A R R +++R L + G +IG+GIFV A+ L + SG+ +
Sbjct: 69 ALRRRSENEMRRCLTWWDLTWFGFGSVIGAGIFVLTGQEAHDHAGPAIVLS-YVASGLSA 127
Query: 413 LLGALSFAELGTVVGKSGAEYAYFQEAFGKIHNF 514
+L + E + +G +AY + G + F
Sbjct: 128 MLSVFCYTEFAVEIPVAGGSFAYLRVELGDVAAF 161
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 302 LGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAELGTVVGKSGAEYAY 481
+G IG+GI+V + AL L + ++GI + L AL +AEL +G+ Y Y
Sbjct: 120 VGSTIGAGIYVLVGTVAREHAGPALTLS-FLIAGIAAALSALCYAELSCRFPLAGSAYHY 178
Query: 482 FQEAFGK 502
G+
Sbjct: 179 SYICIGE 185
>01_07_0156 -
41544396-41544755,41544854-41544983,41545085-41545374,
41545482-41545663,41545784-41546003,41546121-41546139,
41546394-41546654,41546775-41546863
Length = 516
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 KLKRELGLFSAVNL-ILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSF 433
+LKR L S + + +G+ + + L Y G V++ L W V + + ALS
Sbjct: 24 ELKRGLSTLSNFAFSFANISVLTGVTATYNTGLRYGGPVSMTLG-WLVVALFNGCVALSM 82
Query: 434 AELGTVVGKSGAEYAYFQEAFGK 502
AE+ + SG Y + + GK
Sbjct: 83 AEICSAYPTSGGLYYWSAKLAGK 105
>12_01_0301 - 2280215-2281154,2281271-2281338
Length = 335
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 310 NDWIWYIRFPSFSIGVFWVRSAMSNNMDSFRNNILTRSIIVR*VRNCSWKIR-SRVCIFS 486
ND+ ++ P FS + W+ S ++ N D F +N+ II V NCS K +R+
Sbjct: 43 NDFHLFLDCP-FS-KITWIISDINLNTDIFSDNVSMAHIIACIVNNCSNKASLNRIFSIM 100
Query: 487 GSLWE 501
+W+
Sbjct: 101 WQIWK 105
>02_01_0783 +
5835517-5835861,5835989-5836060,5836140-5836220,
5836293-5836490,5836576-5836647,5836803-5836889,
5836986-5837084,5837191-5837274,5837351-5837437,
5837578-5837649,5837912-5838025,5838127-5838214,
5838293-5838388,5838507-5838694
Length = 560
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -2
Query: 642 WMYINGNW--LNCIFGECHYHNSYFCRSKDHYIDPST*ERR*WTPKL*IFPKAS*KYAYS 469
W NGNW L+C YH Y S DP+ R + P L PK +Y Y
Sbjct: 419 WAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPK---EYIYE 475
Query: 468 APDFPTTVPNSAN 430
P ++ AN
Sbjct: 476 PWTAPLSIQKKAN 488
>04_03_0229 -
13006869-13007017,13007925-13008089,13008178-13008332,
13010276-13011021
Length = 404
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 324 PDPIITPRIRLTAENKPSSRFNFMRCRIRCAVCL 223
PDP+I +I +T K S + NF C + A CL
Sbjct: 265 PDPLILTQINITKAIKDSIQLNFGECGL--AACL 296
>01_07_0160 -
41563109-41563468,41563566-41563985,41564082-41564263,
41564362-41564542,41565066-41565084,41565185-41565445,
41566140-41566253,41566264-41566331,41566890-41567018,
41567141-41567245,41567317-41567456,41567519-41567687,
41567824-41567900,41568133-41568187,41568660-41568705,
41568806-41568894,41568996-41569061,41569360-41569425,
41569817-41569906,41570009-41570026
Length = 884
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 308 VMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAELGTVVGKSGAEYAYFQ 487
+ + +G+ + + L Y G V++ L W V + ALS AE+ + SG Y +
Sbjct: 423 ISVLTGVTTTYGTGLRYGGPVSMTLG-WLVVAAFNGCVALSMAEICSAYPTSGGLYYWSA 481
Query: 488 EAFGK 502
+ GK
Sbjct: 482 KLAGK 486
>01_07_0158 -
41556455-41557300,41557402-41557583,41557705-41557885,
41558352-41558370,41558477-41558737,41558777-41558946
Length = 552
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 308 VMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFAELGTVVGKSGAEYAYFQ 487
+ + +G+ + + L Y G V++ L W V + ALS AE+ + SG Y +
Sbjct: 69 ISVLTGVTTTYGTGLRYGGPVSMTLG-WLVVSAFNGCVALSMAEICSAYPTSGGLYYWSA 127
Query: 488 EAFGK 502
+ GK
Sbjct: 128 KLAGK 132
>01_05_0488 -
22647196-22647561,22647847-22647999,22648716-22649663,
22649783-22649830
Length = 504
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 322 WYIRFPSFSIGVFWVRSAMSNNMDSFRN 405
W+IR P SI F RSA + D F+N
Sbjct: 60 WWIRRPFLSIFQFLPRSARAGGEDGFKN 87
>06_01_1155 +
9777611-9777808,9777899-9780132,9780218-9780469,
9780550-9780660,9780750-9780831,9781106-9781297
Length = 1022
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 465 PDFPTTVPNSANDNAPSKDIIPETVHIIRHSATDPEYSNAEAGETNIPD 319
P PT P A+ +P+K P ++ S P+ S E E +IPD
Sbjct: 605 PPLPTPQPVQASPTSPTKQHAPPAPPSVQTSPPTPQSSLVE--EVHIPD 651
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,294
Number of Sequences: 37544
Number of extensions: 413008
Number of successful extensions: 981
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -