Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20917
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 435 ANDNAPSKDIIPETVHIIRHSATDPEYSNAEAGETNIP 322
           A +  P++ ++ +  H+      D  Y N  +GE  IP
Sbjct: 407 AANGKPAEGMLTDVFHVQETDKYDAYYGNRFSGEYEIP 444


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 154 LNTELDKKNRCTCGLSPVNNHSTDLDVTVKLI*RLIFA 41
           L+ +  KKN C   LS     S  +DV  ++   ++FA
Sbjct: 391 LHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFA 428


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 154 LNTELDKKNRCTCGLSPVNNHSTDLDVTVKLI*RLIFA 41
           L+ +  KKN C   LS     S  +DV  ++   ++FA
Sbjct: 391 LHMQPRKKNCCRSWLSKFPTRSKRIDVISRIFFPIVFA 428


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 386 IWTVSGIISLLGALSFAELGTV--VGKSGA 469
           IW   G +  LGA+  A  G V  VG S A
Sbjct: 166 IWGDQGFLKKLGAVDIAGSGAVHLVGGSSA 195


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 308  VMIGSGIFVSPASALEY 358
            V IGS I VSP + L Y
Sbjct: 1241 VCIGSQIMVSPETLLSY 1257


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 RQRIKLKRELGLFSAVNLILGVMI 316
           RQRI L +E      + +I+GV +
Sbjct: 314 RQRISLSKERRAARTLGVIMGVFV 337


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 RQRIKLKRELGLFSAVNLILGVMI 316
           RQRI L +E      + +I+GV +
Sbjct: 314 RQRISLSKERRAARTLGVIMGVFV 337


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 245 RQRIKLKRELGLFSAVNLILGVMI 316
           RQRI L +E      + +I+GV +
Sbjct: 314 RQRISLSKERRAARTLGVIMGVFV 337


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 374 LCLIIWTVSGIISLLGA 424
           L ++ WT  G++S++GA
Sbjct: 282 LYVLSWTPYGVMSMIGA 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,027
Number of Sequences: 438
Number of extensions: 5009
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)