Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20917
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05940.1 68414.m00623 amino acid permease family protein low ...    49   4e-06
At3g10600.1 68416.m01275 amino acid permease family protein simi...    46   3e-05
At5g04770.1 68418.m00492 amino acid permease family protein simi...    46   4e-05
At1g17120.1 68414.m02086 amino acid permease family protein low ...    43   3e-04
At4g21120.1 68417.m03054 amino acid permease family protein simi...    40   0.002
At2g34960.1 68415.m04290 amino acid permease family protein simi...    36   0.022
At1g58030.1 68414.m06577 amino acid permease family protein simi...    36   0.039
At2g33260.1 68415.m04077 tryptophan/tyrosine permease family pro...    35   0.052
At3g03720.1 68416.m00377 amino acid permease family protein simi...    35   0.069
At5g36940.1 68418.m04430 amino acid permease family protein simi...    34   0.12 
At4g16480.1 68417.m02495 sugar transporter family protein simila...    30   1.5  
At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to ...    29   3.4  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    28   6.0  
At1g52290.1 68414.m05900 protein kinase family protein contains ...    28   6.0  

>At1g05940.1 68414.m00623 amino acid permease family protein low
           similarity to SP|P30823 High-affinity cationic amino
           acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
           Pfam profile PF00324: Amino acid permease
          Length = 569

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = +2

Query: 221 SKQTAQRMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVS 400
           S QTA R      L R LGLF  + L +G  IG+G+FV   +    +G      I + ++
Sbjct: 35  SSQTAVRSTSGDSLVRRLGLFDLILLGVGASIGAGVFVVTGTVARDAGPGV--TISFLLA 92

Query: 401 GIISLLGALSFAELGT-VVGKSGAEYAYFQEAFGKIHNFGVHYRL 532
           G   +L AL +AEL +      G  Y Y   AF +I  F V  +L
Sbjct: 93  GASCVLNALCYAELSSRFPAVVGGAYMYSYSAFNEITAFLVFVQL 137


>At3g10600.1 68416.m01275 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 584

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
 Frame = +2

Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
           +++R L  +  + L +G MIG+G+FV+   A       ++ ++ + ++G+ +LL A  + 
Sbjct: 55  QMRRTLRWYDLIGLGIGGMIGAGVFVTTGRASRLYAGPSI-VVSYAIAGLCALLSAFCYT 113

Query: 437 ELGTVVGKSGAEYAYFQEAFGKIHNF--GVHYRLSHVLGS 550
           E    +  +G  ++Y +  FG+   F  G +  + +VL +
Sbjct: 114 EFAVHLPVAGGAFSYIRITFGEFPAFITGANLIMDYVLSN 153


>At5g04770.1 68418.m00492 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 583

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/100 (22%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
 Frame = +2

Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
           +++R L  +  + L +G M+G+G+FV+   A       ++ ++ + ++G+ +LL A  + 
Sbjct: 56  QMRRTLRWYDLIGLGIGGMVGAGVFVTTGRASRLDAGPSI-VVSYAIAGLCALLSAFCYT 114

Query: 437 ELGTVVGKSGAEYAYFQEAFGKIHNF--GVHYRLSHVLGS 550
           E    +  +G  ++Y +  FG+   F  G +  + +V+ +
Sbjct: 115 EFAVHLPVAGGAFSYIRITFGEFPAFFTGANLVMDYVMSN 154


>At1g17120.1 68414.m02086 amino acid permease family protein low
           similarity to SP|O43246 Cationic amino acid
           transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 590

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/89 (26%), Positives = 42/89 (47%)
 Frame = +2

Query: 233 AQRMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIIS 412
           A R      ++R L  +  + L  G ++GSG+FV            A+ L  + +SG+ +
Sbjct: 72  AARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLS-YAISGVSA 130

Query: 413 LLGALSFAELGTVVGKSGAEYAYFQEAFG 499
           LL  L +AE G  +  +G  ++Y +   G
Sbjct: 131 LLSVLCYAEFGVEIPVAGGSFSYLRVELG 159


>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +2

Query: 239 RMRQRIKLKRELGLFSAVNLILGVMIGSGIFV-SPASALEYSGSVALCLIIWTVSGIISL 415
           + R   ++K+ L  +  +   +G +IGSGIFV +   A  +SG   +  + + VSG+ ++
Sbjct: 63  KARSGHEMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVV--LSYVVSGVSAM 120

Query: 416 LGALSFAELGTVVGKSGAEYAYFQEAFGKIHNF 514
           L    + E    +  +G  +AY +   G    F
Sbjct: 121 LSVFCYTEFAVEIPVAGGSFAYLRVELGDFMAF 153


>At2g34960.1 68415.m04290 amino acid permease family protein similar
           to cationic amino acid transporter 3 [Rattus norvegicus]
           GI:2116552; contains Pfam profile PF00324: Amino acid
           permease
          Length = 569

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +2

Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSVALCLIIWTVSGIISLLGALSFA 436
           ++KR L  +  V    G +IG+GIFV            A+ L  + VSG+ ++L    + 
Sbjct: 63  EMKRCLTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLS-YVVSGLSAMLSVFCYT 121

Query: 437 ELGTVVGKSGAEYAYFQEAFGKIHNF 514
           E    +  +G  +AY +   G    F
Sbjct: 122 EFAVEIPVAGGSFAYLRIELGDFAAF 147


>At1g58030.1 68414.m06577 amino acid permease family protein similar
           to SP|P18581 Low-affinity cationic amino acid
           transporter-2 (CAT-2) (T-cell early activation protein)
           {Mus musculus}; contains Pfam profile PF00324: Amino
           acid permease
          Length = 635

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
 Frame = +2

Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPAS-ALEYSG-SVALCLIIWTVSGIISLLGALS 430
           +L R L +   V + +G  IG+G+++   + A E+SG S+AL  +I   +GI + L A  
Sbjct: 39  QLARALTVPHLVAIGVGATIGAGVYILVGTVAREHSGPSLALSFLI---AGIAAGLSAFC 95

Query: 431 FAELGTVVGKSGAEYAY 481
           +AEL +    +G+ Y Y
Sbjct: 96  YAELSSRCPSAGSAYHY 112


>At2g33260.1 68415.m04077 tryptophan/tyrosine permease family
           protein contains Pfam profile PF03222:
           Tryptophan/tyrosine permease family
          Length = 436

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
 Frame = +2

Query: 263 KRELGLFSAVNLILGVMIGSGIFVSPASALEYSGSV-----ALCLIIWTVSGIISLLGAL 427
           K+    ++AV+LI+G  +G G+   PA+ +  SGS+      LC  ++ +S I+ L+  L
Sbjct: 11  KKGKSFWAAVSLIIGTAVGPGMLGLPAATIR-SGSIPSTIALLCSWVYVISSIL-LVAEL 68

Query: 428 SFAEL 442
           SFA +
Sbjct: 69  SFAAM 73


>At3g03720.1 68416.m00377 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 600

 Score = 34.7 bits (76), Expect = 0.069
 Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = +2

Query: 257 KLKRELGLFSAVNLILGVMIGSGIFVSPAS-ALEYSGSVALCLIIWTVSGIISLLGALSF 433
           +L ++L     V + +G  IG+G+++   + A E++G  AL +  + ++G+ + L A  +
Sbjct: 23  QLAKKLSAVDLVAIGVGTTIGAGVYILVGTVAREHTGP-ALAVSFF-IAGVAAALSACCY 80

Query: 434 AELGTVVGKSGAEYAYFQEAFGK 502
           AEL +    +G+ Y Y     G+
Sbjct: 81  AELASRCPSAGSAYHYAYICLGE 103


>At5g36940.1 68418.m04430 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 609

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +2

Query: 218 NSKQTAQRMRQRIKLKRELGLFSAVNLILGVMIGSGIFVSPAS-ALEYSGSVALCLIIWT 394
           +S   A+      +L + L     + + +G  IG+G+++   + A E+SG  AL L  + 
Sbjct: 15  SSNGKAETHHHHQQLAKALTFPHLIAIGVGSTIGAGVYILVGTVAREHSGP-ALALS-FL 72

Query: 395 VSGIISLLGALSFAELGTVVGKSGAEYAYFQEAFGK 502
           ++GI + L A  +AEL +    +G+ Y Y     G+
Sbjct: 73  IAGISAALSAFCYAELSSRFPSAGSAYHYSYICIGE 108


>At4g16480.1 68417.m02495 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 582

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 351 NAEAGETNIPDPIITPRIRLTAENKPSSRFNFMRC-RIRCAVC 226
           +A    T  P+   +    L AEN P SR+N M+C R  C  C
Sbjct: 375 DAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRSECGFC 417


>At4g24510.1 68417.m03514 eceriferum protein (CER2) identical to
           (CER2) [Arabidopsis thaliana] GI:1213594; contains Pfam
           profile PF02458: Transferase family
          Length = 421

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 474 YSAPDFPTTVPNSANDNAPSKDIIPETVHIIRHSATDPEYSNAE 343
           +SA  F  T+    + +AP+K + P+T  +  H+  D E  + E
Sbjct: 172 FSASTFMKTLGQLVSGHAPTKPVYPKTPELTSHARNDGEAISIE 215


>At5g58410.1 68418.m07314 expressed protein contains similarity to
           hypothetical proteins
          Length = 1873

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +1

Query: 469 RVCIFSGSLWENSQFWGPLPSFSCAWIYVMILRPAE--VAIVVMTFAEYAIQPITID 633
           R  +  G  W   QF GPL S +  WI    L      +++ V  F    + P+ ID
Sbjct: 569 RYSVLEGESWPLHQFMGPLLSKAFPWIRSSELLDGVKLLSVSVSVFGPRKVVPVLID 625


>At1g52290.1 68414.m05900 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 509

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 468 APDFPTTVPNSANDNAPSKDII 403
           AP+FP+T P++A   APS+  I
Sbjct: 14  APEFPSTTPDTATSPAPSQPSI 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,108
Number of Sequences: 28952
Number of extensions: 347522
Number of successful extensions: 834
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)