Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20916
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   6.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 598 VSLLFIDWCFVFTPFI-YFSSMWIRLKYE*LYMYSTEYEFGHDSNATHVA 744
           +  + + + +V T  I YFS   I+L +E  Y+Y+      ++  A HVA
Sbjct: 113 IETIVLIFTYVMTVIIVYFSFSLIKLAFEEAYVYAPSVAKANEGLAKHVA 162


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +2

Query: 119 ELSQKRQYQHQRYLTKRPDPARLF*MRHGQGTVHE-RWKNLQACSSEALPTACARCSNKQ 295
           EL    + +  + LT+  DPAR+F  R  +G V +    N Q  ++  + T   R  +  
Sbjct: 303 ELQVLLESKRVQKLTEEYDPARMFLARWAEGIVEQSESNNSQPVNNAGVWTDAQREEDSS 362

Query: 296 KAAFRTLLLAIRA-RSEPSFLE 358
              F  + +  R  R +P  +E
Sbjct: 363 LGPFELVYIEERVKRDDPLSVE 384


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 174 ILLGYFKCVMDRGPCTKDGKTFKRALPRHCRQRVR 278
           +LL  ++CV    PCTK+G  F  A+    R  VR
Sbjct: 224 VLLNGYECV----PCTKNGTGFVHAIMDTFRHHVR 254


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 174 ILLGYFKCVMDRGPCTKDGKTFKRALPRHCRQRVR 278
           +LL  ++CV    PCTK+G  F  A+    R  VR
Sbjct: 224 VLLNGYECV----PCTKNGTGFVHAIMDTFRHHVR 254


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 SLIPPPSAPTRKTANSSCCRLCCNQKESMRKTS 10
           S  P P  PT  T+NSS      N+++S+R +S
Sbjct: 3   SFHPTPGKPTTATSNSSLNFFVRNREKSIRCSS 35


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 659 IDEK*INGVKTKHQSINKRLTEFENRIPCFYNNIH*N 549
           + E  +NGV  K  + N R++ F+N      NN   N
Sbjct: 217 VSEGPLNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNN 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,348
Number of Sequences: 5004
Number of extensions: 63151
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)