Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20916
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350...    29   4.0  
04_04_0386 + 24865344-24865973,24866068-24866439                       29   4.0  
06_03_0395 - 20354713-20355570                                         28   9.2  

>06_03_1047 -
           27133869-27134345,27134444-27134701,27134841-27135041,
           27135242-27135584,27135674-27135732,27136256-27136581,
           27136753-27136849,27137072-27137182,27137691-27138305,
           27139578-27139880
          Length = 929

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -1

Query: 333 ALIARRSVRKAAFCLLEHRAHAV 265
           A+ ARR VR+ A  LL++RAH V
Sbjct: 72  AVSARRGVRRVAVSLLQNRAHVV 94


>04_04_0386 + 24865344-24865973,24866068-24866439
          Length = 333

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 38  LQHKRQHEEFAVLRVGADGGGIKLPAAELSQKRQYQHQRYLTKR 169
           + H     E AV+   A GGG  +P     ++R+ +  RY  KR
Sbjct: 207 MNHSVSSSEAAVVPDAAAGGGAPMPVVSRGREREARLMRYREKR 250


>06_03_0395 - 20354713-20355570
          Length = 285

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 99  PPPSAPTRKTANSSCCRLC 43
           PPP+AP  +   + CCR C
Sbjct: 128 PPPTAPPLEAPANGCCRRC 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,064,211
Number of Sequences: 37544
Number of extensions: 407191
Number of successful extensions: 1134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)