Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20916
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    32   0.38 
AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical ...    31   0.66 
AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical ...    31   0.88 
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    28   8.2  

>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 248 SSEALPTACARCSNKQKAAFRTLLLAIRARSEPSFLELLDKYDPSRS 388
           SS+  PTA  R S    AAF   L A+  +   S L++++KYDP ++
Sbjct: 383 SSDVAPTATCRTS-VGVAAFNGSLYAVGGQDGESCLDVVEKYDPRKN 428


>AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical
           protein Y11D7A.13 protein.
          Length = 420

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 623 VLFSHHLFIFHQCGYD*NTSNYICIPQNTNLVMIAMP 733
           VLF  HL++F +C YD     + C  +NT    I  P
Sbjct: 144 VLFDEHLYVFDKCSYDSKKRFFRCERKNTCPARIHTP 180


>AF078784-1|AAK18967.1|  458|Caenorhabditis elegans Hypothetical
           protein H34I24.2 protein.
          Length = 458

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 563 CYKNMEFYFQIQSVFCLLIGVLFS---HHLFIFHQCGYD*NTSNYICIPQNTNLV 718
           C  +M+ Y Q Q V C   G  F+   ++  +++  GY+ N +N   +P N+N +
Sbjct: 293 CPGDMDGYTQCQQVACSAAGTNFTIGTNNRGVWYSPGYNSNNTNSSVVPANSNCI 347


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 135  RFWDSSAAGSLIPPPSAPTRKTANSSCCRLCCNQ 34
            RF   +  G+   P  +     +NS C RLCCNQ
Sbjct: 1152 RFSFQNCRGAAFSPTGSLNNFVSNSQCNRLCCNQ 1185


>Z69794-3|CAA93680.1|  747|Caenorhabditis elegans Hypothetical
           protein R03G8.6 protein.
          Length = 747

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 97  WYQAPGSRAIPETTISTSTLSYKTTGSCSVILNASWTG 210
           WYQ PG   +    ++ ++ S +     SVI+NA+  G
Sbjct: 519 WYQEPGEARVQMAWLNRNSTSLELVADDSVIINANSIG 556


>Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical
           protein ZK1010.6 protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 583 LFSNSVSLLFIDWCFVFTPFIYFSSMWIRL 672
           +F+NSV   F+D  F   P  ++  +WI L
Sbjct: 184 VFTNSVGTCFVDPMFTPEPLNFYGPLWIAL 213


>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 540 WQ*ILMNIVIKTWNSIFKFSQSFVY*LVFCFHTIYLFFINV 662
           W  I + ++ K  N +F  +  F   L FC  TI+ FF  +
Sbjct: 346 WSSIPLYVIGKVGNVVFSPNSLFWALLTFCVFTIFSFFAKI 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,353
Number of Sequences: 27780
Number of extensions: 363262
Number of successful extensions: 1107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)