Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20915
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 7e-08
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 32 0.41
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 32 0.41
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07) 32 0.41
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12) 31 0.72
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 31 0.72
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 31 0.95
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 30 2.2
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08) 29 3.8
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24102| Best HMM Match : DUF753 (HMM E-Value=9.4) 28 6.7
>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 54.8 bits (126), Expect = 7e-08
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 110 KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM 214
K +K F +KKWNA+A+W+WD+ D CAICR +M
Sbjct: 25 KESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59
>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 38.7 bits (86), Expect = 0.005
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPLDNR 360
C H FH CI WL T+ +CP+D +
Sbjct: 230 CRHVFHRDCIDSWLATQSICPVDGQ 254
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 32.3 bits (70), Expect = 0.41
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPL 351
C+H+F +C+ WL+ R CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 286 CNHAFHFHCISRWLK 330
CNH FH CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393
>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
Length = 617
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 265 CTVAWGVCNHAFHFHCISRWLKTRQVCP 348
CT+ C H+FH HCI WL P
Sbjct: 571 CTLLGLPCGHSFHQHCIEVWLAGDNTAP 598
>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 286 CNHAFHFHCISRWL-KTRQVCPLDNREWEFQK 378
C+HA+H C+ WL + ++ CP+ R E K
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPVCKRPVETSK 350
>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
Length = 558
Score = 31.5 bits (68), Expect = 0.72
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPL 351
C H FH C+ WL + CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 31.5 bits (68), Expect = 0.72
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 283 VCNHAFHFHCISRWLKTRQVCPL 351
VC H + C+SRWL+ CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 110 KGDKKRFEVKKWNAVALW-AWDIVVDNCAICRNHIMDLCIECQANQASAIVKNAQLLGVF 286
K K FE KK NA AL ++ V I RN ++C C+A + S++++ L
Sbjct: 162 KEGKLHFEAKKRNAPALPPVRELKVLKDNISRNSSSEICPSCRALETSSLIEFFSLSAKT 221
Query: 287 VIMHSISTV 313
++ ++T+
Sbjct: 222 IVSSCLATL 230
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 286 CNHAFHFHCISRWLK-TRQVCPLDNRE 363
C H FH CI WL T CPLD E
Sbjct: 275 CRHNFHSACIRTWLTYTSCKCPLDGLE 301
>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPLDNRE 363
C+H FH CI WL+ CP+ E
Sbjct: 80 CDHLFHPGCILPWLEKTNSCPVCRHE 105
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 375
C H +H CI +WLK R D +W+ +
Sbjct: 311 CLHEYHTRCIDKWLKNR-----DQSQWKLE 335
>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +1
Query: 283 VCNHAFHFHCISRWLKT---RQVCPL 351
+C H F + C+ RWL+T R +CP+
Sbjct: 77 MCGHLFCWPCLHRWLETRPNRSMCPV 102
>SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 194 ICRNHIMDLCIECQANQASAIVKNAQLLGVFVIMHSISTVFP 319
ICRN ++C C+A S++++ L ++ ++T+ P
Sbjct: 149 ICRNSSSEICPSCRALDTSSLIEFFLLSAKTIVSSCLATLLP 190
>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
Length = 688
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 286 CNHAFHFHCISRWLKTRQVCPL 351
C H F CIS W Q CP+
Sbjct: 499 CKHIFCEDCISLWFDREQTCPM 520
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = -3
Query: 633 RISWSDLLPLSKIFI-----YNHRSLLFLCQIIMNNR--FSTNFQLKFTTEFCKSYFIIT 475
R+ + LPLS++ + Y+H + + + + R + LKF E CK YFI+
Sbjct: 123 RVDSATALPLSRVIVQCSSEYSHDLVADITRFLCMKRRVIREDDSLKFRFESCKKYFILR 182
Query: 474 NLI 466
L+
Sbjct: 183 VLL 185
>SB_24102| Best HMM Match : DUF753 (HMM E-Value=9.4)
Length = 140
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 633 RISWSDLLPLSKIFIYNHRSLLFLCQIIMNNRFSTNFQ 520
R+++ +L + I NH FLC+I++ ++F T ++
Sbjct: 100 RVTFGNLFYGYRARIRNHGHSCFLCEIVIRSQFHTTYE 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,896,313
Number of Sequences: 59808
Number of extensions: 449820
Number of successful extensions: 991
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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