Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20915
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.7  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            23   3.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 333 SLQPTGNTVEMECMITNT 280
           S +P  NTVE  C++ NT
Sbjct: 473 STRPKSNTVENACVLKNT 490


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 199 PKSHNGSVY 225
           PK HNGS+Y
Sbjct: 31  PKDHNGSIY 39


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 364 ILYCLVDKLVESSTNGKYSGNGMHDYKHPKQLCILHY 254
           I+  L +K + ++ N KY+ N  ++Y +      L+Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYY 117


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 256 YG*GLICLAFDTQIHYVISANSTVVDNN 173
           Y  G+IC A      YV++A   ++D N
Sbjct: 182 YEPGMICGATIISKRYVLTAAHCIIDEN 209


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 187 LCYLPKSHNGSVYRMPSKSSLSHSEECTVA 276
           +C L +  +G+VY++  ++  +H+   T+A
Sbjct: 38  VCALNELKSGAVYKVVDQTGPTHAPIFTIA 67


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 149 HSTFLLRIFFYLLCHY 102
           H T LL++  YL C Y
Sbjct: 40  HPTTLLKLKRYLFCEY 55


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 694 YTLLSNLCNFYLPC 653
           + + S+L +FY+PC
Sbjct: 343 FIIYSSLSSFYIPC 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,532
Number of Sequences: 438
Number of extensions: 4433
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)