Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit Sen34|Sc...    27   2.2  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   6.6  

>SPBC19C7.07c |sen34||tRNA-splicing endonuclease subunit
           Sen34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 475 TKPQLPNENLFL*IPSKLRK 534
           T PQLP +N+FL +P +L K
Sbjct: 39  TLPQLPQQNVFLGLPMELSK 58


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 194 GYIVIANTTTHIPRLRRTKHINSIASC*RRSVHAYSALKSAHPTGISPVQLCSMHS 361
           G++     T  I R +  K   S+ S      H       A   G+SP+QLC  +S
Sbjct: 37  GHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNS 92


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 185 ISPMNPNAFQDCPLGVVLVCFFSCPSNIRKF 93
           I+  N   F+   +GV+L  F   PSN RKF
Sbjct: 327 INDANGGVFESEKIGVLLCKFSVLPSNHRKF 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,109
Number of Sequences: 5004
Number of extensions: 61024
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)