Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)                 28   7.1  
SB_58978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = -3

Query: 706  VLTGLKKITNHYFQNKG 656
            V+TGL+K TN+YFQ +G
Sbjct: 1410 VITGLRKFTNYYFQVRG 1426


>SB_31675| Best HMM Match : zf-CCHC (HMM E-Value=0.012)
          Length = 550

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 GQLKKHTSTTPRGQSWKALGFIGEMLLRVHR 204
           G L+K    T    S++ LGF+G + + VHR
Sbjct: 333 GNLRKEDILTQYADSFEGLGFLGPVQMPVHR 363


>SB_58978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 357 IANVHNQA*LVTLKRTVSFYVFNDNTKEFI*RSKSSPS 470
           +AN H QA +   + TVS +  NDN K+ +   K  P+
Sbjct: 88  VANNHEQAVVAHQENTVSVFEVNDNDKDAVTFRKIIPN 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,659,492
Number of Sequences: 59808
Number of extensions: 426221
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)