Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-7|AAF99956.1|  252|Caenorhabditis elegans Hypothetical pr...    30   1.5  
X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.     29   2.7  
AF016437-2|AAB65887.1|  554|Caenorhabditis elegans Hypothetical ...    29   2.7  

>U28735-7|AAF99956.1|  252|Caenorhabditis elegans Hypothetical
           protein F48E3.6 protein.
          Length = 252

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 173 NPNAFQDCPLGVVLVCFFSCPSNIRK 96
           NP  F   PL   L C F+C S I+K
Sbjct: 12  NPEEFYPAPLIAALFCIFACASTIKK 37


>X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.
          Length = 557

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 722 IWHRSSVNRPKKNYQSLFPKQRLLMLY 642
           IW + S+NRP+++Y+  +PK  +  +Y
Sbjct: 497 IWEKYSLNRPERHYRISYPKCEMRDVY 523


>AF016437-2|AAB65887.1|  554|Caenorhabditis elegans Hypothetical
           protein F13H6.3 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 722 IWHRSSVNRPKKNYQSLFPKQRLLMLY 642
           IW + S+NRP+++Y+  +PK  +  +Y
Sbjct: 497 IWEKYSLNRPERHYRISYPKCEMRDVY 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,388,064
Number of Sequences: 27780
Number of extensions: 327257
Number of successful extensions: 690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)