Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20914
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 710 SSVNRPKKNYQSLFPKQRLLMLYVR 636
           +S  RPK   QSL P Q  L  Y+R
Sbjct: 250 ASFGRPKMTPQSLLPSQTGLSPYLR 274


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 733  TKR*FGTEVVLTGLKKITNHYFQNKGF 653
            TK    +E +L GLKK TN+  Q   F
Sbjct: 1133 TKITSSSETILHGLKKYTNYSMQVLAF 1159



 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 728 TLIWHRSSVNRPKKNYQSLFPKQRLLMLYVRKVEQLAD 615
           +++W R +   P    Q +FP   L+   +  VE+++D
Sbjct: 521 SIVWERDTRVLPINRKQKVFPNGTLI---IENVERMSD 555


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 706  VLTGLKKITNHYFQNKGF 653
            VLTGL+K TN+  Q   F
Sbjct: 1176 VLTGLRKYTNYTIQVLAF 1193


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 706  VLTGLKKITNHYFQNKGF 653
            VLTGL+K TN+  Q   F
Sbjct: 1172 VLTGLRKYTNYTIQVLAF 1189


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 130 TSTTPRGQSWKALGFIGEMLLRVHRHRKYNHSH 228
           T+T     +  A G I +  L+ H H + +H H
Sbjct: 118 TATAAATATTTATGLIKQETLQRHHHLQNHHHH 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,403
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)