Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20913
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.0  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   7.9  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    23   9.9  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 430 RWSSGALAECEQQIRQFIIQNVFREHPHSFLI 335
           R ++  L+EC   +R+  +QN F    H  L+
Sbjct: 849 RVANSKLSECSDDVRRLTLQNSFDLREHQTLV 880


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 403 CEQQIRQFIIQNVFREHPHSFLINKTYLLVKS 308
           C+ Q+R++  Q  +R+H  SF+    Y   KS
Sbjct: 447 CKNQLREYEKQMEYRKHLQSFIDKFRYNAAKS 478


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 22.6 bits (46), Expect(2) = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 465 SDGLATVWRRSSDGLAARWPSVSSK 391
           S GLA+V   S DG +   P+ S++
Sbjct: 64  STGLASVTESSDDGASTALPTTSTE 88



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 522 SHRGLRRSGDGLVTV 478
           +HR  RR  DG++TV
Sbjct: 24  NHRHHRRDDDGVLTV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,477
Number of Sequences: 5004
Number of extensions: 52164
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)