Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20913
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1494 + 27523016-27524040,27524971-27525118                       30   2.0  
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914...    29   3.6  
11_06_0342 - 22523610-22524332                                         28   6.2  

>08_02_1494 + 27523016-27524040,27524971-27525118
          Length = 390

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 506 RRPRWERQMTPS*TRDAVDTIRFYILRMLF 595
           R+ RWE++MT S TR A++    +ILR L+
Sbjct: 298 RQERWEKKMTASLTRLAMEEGNSFILRDLY 327


>03_02_0643 -
           10090720-10091007,10091121-10091228,10091314-10091400,
           10091488-10091568,10091669-10091803,10091919-10092140,
           10092377-10092457,10092565-10092726,10092851-10093041,
           10093190-10093331,10093449-10093547,10093668-10093806,
           10094355-10094392
          Length = 590

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 454 SDGLATV*RWSSGALAECEQQIRQFIIQNVFREHPHSFLINK 329
           SDG+     W  G  A  EQQ+   +++N  + +PH+  +NK
Sbjct: 441 SDGVGY--NWIDGLKAFTEQQVSDEMMKNAAKVYPHNTPVNK 480


>11_06_0342 - 22523610-22524332
          Length = 240

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 522 SHR-GLRRSGDGLVTV*RRSSDGLATVWRRSSDGLAAR 412
           SHR G +  G+GL++  RR+   +AT+W R   G+AAR
Sbjct: 27  SHRLGGQPRGEGLLSGLRRARYAVATLWERR--GIAAR 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,572,984
Number of Sequences: 37544
Number of extensions: 332045
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)