Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20913
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    29   4.8  
SB_28621| Best HMM Match : Vicilin_N (HMM E-Value=0.34)                28   6.4  
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +2

Query: 410 QRAARPSLDRRQTVARPSLDRR*TVTRPSPDRRRPRWERQMTP 538
           QR  RPS  ++Q   RPS  +R    RPS  +R PR  +Q TP
Sbjct: 218 QRHPRPS--QQQRYPRPSQQQR--QPRPSQQQRYPRHNQQQTP 256


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 422  RPSLDRRQTVARPSLDRR*TVTRPSPDRRRPRW-ERQMTPS*TRDAVD 562
            R  +DRR    RP +DRR    R   DRR  R  ER+  P    D  D
Sbjct: 1833 RSGMDRRDERPRPDIDRRDERLRHEADRRGDRHDERRPMPERKDDRRD 1880


>SB_28621| Best HMM Match : Vicilin_N (HMM E-Value=0.34)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 425 PSLDRRQTVARPSLDRR*TVTRPSPDRRRPR 517
           P++DR+ T   P++DR+     P+ DR+ P+
Sbjct: 240 PTIDRQATSGYPTIDRQVKKRCPTVDRKSPK 270


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 410 QRAARPSLDRRQTVARPSLDRR*TVTRPSPDRRRPR 517
           +R   PSL+RR      S +RR + +R SP+RRR R
Sbjct: 128 RRRRSPSLERRSRSRSGSRERRRSPSR-SPERRRER 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,809
Number of Sequences: 59808
Number of extensions: 389300
Number of successful extensions: 1022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)